RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 DNAJC11Q9NVH1 559 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 SLC7A4O43246 635 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 EEF1DP29692 281 aaKnown RBP10.11□□□□□ -0.79
USP54-201ENST00000339859 PGM1P36871 562 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 ACTR1BP42025 376 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 ERVFC1P60507 584 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 ACTR1AP61163 376 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 SLC10A7Q0GE19 358 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 ATP13A5Q4VNC0 1218 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 KIAA1161Q6NSJ0 714 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 GPRIN3Q6ZVF9 776 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 ZNF366Q8N895 744 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 DDX1Q92499 740 aaKnown RBP10.11□□□□□ -0.79
USP54-201ENST00000339859 TBATAQ96M53 351 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 CCM2Q9BSQ5 444 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 PCDHB11Q9Y5F2 797 aa10.11□□□□□ -0.79
USP54-201ENST00000339859 A0A0U1RQJ8 604 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 BANF1O75531 89 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 HK2P52789 917 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 GYS2P54840 703 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 KCTD4Q8WVF5 259 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 PPP3R2Q96LZ3 170 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 STRADBQ9C0K7 418 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 ANKZF1Q9H8Y5 726 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 TMLHEQ9NVH6 421 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 RNGTTO60942 597 aaKnown RBP10.1□□□□□ -0.79
USP54-201ENST00000339859 APBB3O95704 486 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 MYOGP15173 224 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 ABCG1P45844 678 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 SRFBP1Q8NEF9 429 aaKnown RBP10.1□□□□□ -0.79
USP54-201ENST00000339859 FGF13Q92913 245 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 SLC12A4Q9UP95 1085 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 R3HDM2Q9Y2K5 976 aaKnown RBP10.1□□□□□ -0.79
USP54-201ENST00000339859 ARL5AQ9Y689 179 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 MYO1GB0I1T2 1018 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 KMOO15229 486 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 COL6A2P12110 1019 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 IL1R2P27930 398 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 COPAP53621 1224 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 IFI35P80217 286 aaPredicted RBP10.1□□□□□ -0.79
USP54-201ENST00000339859 DSC1Q08554 894 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 SEMA5AQ13591 1074 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 TMEM132CQ8N3T6 1108 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 CAMKK1Q8N5S9 505 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 LMO3Q8TAP4 145 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 HIC2Q96JB3 615 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 SNX15Q9NRS6 342 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 ZNF780BQ9Y6R6 833 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.1□□□□□ -0.79
USP54-201ENST00000339859 EIF4E1BA6NMX2 242 aaKnown RBP10.1□□□□□ -0.79
USP54-201ENST00000339859 HIDE1A8MVS5 230 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 SERPINB5P36952 375 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 SLC7A9P82251 487 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 RASA2Q15283 850 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 ZBTB6Q15916 424 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 GRAMD1BQ3KR37 738 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 FUT11Q495W5 492 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 BHLHB9Q6PI77 547 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 R3HCC1LQ7Z5L2 792 aaKnown RBP10.1□□□□□ -0.79
USP54-201ENST00000339859 RALGPS2Q86X27 583 aaPredicted RBP10.1□□□□□ -0.79
USP54-201ENST00000339859 MIER2Q8N344 545 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 FIBINQ8TAL6 211 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 NAF1Q96HR8 494 aaKnown RBP10.1□□□□□ -0.79
USP54-201ENST00000339859 LMLNQ96KR4 655 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 CRISPLD2Q9H0B8 497 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 ACSS3Q9H6R3 686 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 HCFC1R1Q9NWW0 138 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 ABI3Q9P2A4 366 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 ADAMTSL1Q8N6G6 1762 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 RNF103-CHMP3A0A140T963 221 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 CNTN5O94779 1100 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 USP46P62068 366 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 SIRPB2Q5JXA9 342 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 SLC9A4Q6AI14 798 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 PRMT9Q6P2P2 845 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 CATSPER1Q8NEC5 780 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 TRPC4APQ8TEL6 797 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 ZNF473Q8WTR7 871 aaKnown RBP10.1□□□□□ -0.79
USP54-201ENST00000339859 BTN2A2Q8WVV5 523 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 EXO5Q9H790 373 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 CHRAC1Q9NRG0 131 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 COL4A5P29400 1685 aa10.1□□□□□ -0.79
USP54-201ENST00000339859 CFAP73A6NFT4 308 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 NME5P56597 212 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 ELAVL3Q14576 367 aaKnown RBP10.09□□□□□ -0.79
USP54-201ENST00000339859 DUSP6Q16828 381 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 DENND1AQ8TEH3 1009 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 ZFYVE19Q96K21 471 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 GPR174Q9BXC1 333 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 EFCAB1Q9HAE3 211 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 PSMD13Q9UNM6 376 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 AP3M1Q9Y2T2 418 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 FAM107AO95990 144 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 ABCB1P08183 1280 aaPredicted RBP10.09□□□□□ -0.79
USP54-201ENST00000339859 OCM2P0CE71 109 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 OCMP0CE72 109 aaPredicted RBP10.09□□□□□ -0.79
USP54-201ENST00000339859 AQP5P55064 265 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 SMAD4Q13485 552 aaKnown RBP10.09□□□□□ -0.79
USP54-201ENST00000339859 ZNF598Q86UK7 904 aaKnown RBP10.09□□□□□ -0.79
USP54-201ENST00000339859 LRRTM3Q86VH5 581 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms