RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 HKDC1Q2TB90 917 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 REP15Q6BDI9 236 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 CES3Q6UWW8 571 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 KCTD4Q8WVF5 259 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 SEMA4DQ92854 862 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 SPON1Q9HCB6 807 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 ABCB10Q9NRK6 738 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 ECM29Q5VYK3 1845 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 PTPRJQ12913 1337 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 PER2O15055 1255 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 RPL38P63173 70 aaKnown RBP10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 STARD3Q14849 445 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 CCDC157Q569K6 752 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 TWIST2Q8WVJ9 160 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 SEMA3CQ99985 751 aa10.25□□□□□ -0.77
CCDC88A-202ENST00000336838 CCNHP51946 323 aaPredicted RBP10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 WNT3AP56704 352 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 USP4Q13107 963 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 PPP1R26Q5T8A7 1209 aaPredicted RBP10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 DDI2Q5TDH0 399 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 ZDHHC24Q6UX98 284 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 C11orf65Q8NCR3 313 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 EEF1AKMT1Q8WVE0 214 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 HTATIP2Q9BUP3 242 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 MIOSQ9NXC5 875 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 DOLKQ9UPQ8 538 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 CLDN9O95484 217 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 ESR1P03372 595 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 C8BP07358 591 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 NR4A1P22736 598 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 PEX2P28328 305 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 GTF2E2P29084 291 aaKnown RBP10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 SOX10P56693 466 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 NPY5RQ15761 445 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 ASB8Q9H765 288 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 CASTOR2A6NHX0 329 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 H0YC42 278 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 ATP4BP51164 291 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 FSTL1Q12841 308 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 TRIM32Q13049 653 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 ARL13AQ5H913 290 aaPredicted RBP10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 DNAJC14Q6Y2X3 702 aaPredicted RBP10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 FAM35AQ86V20 835 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 CCDC185Q8N715 623 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 C7orf43Q8WVR3 580 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 HAVCR1Q96D42 359 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 SCAF8Q9UPN6 1271 aaKnown RBP10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 IGLV3-22A0A075B6J6 115 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 PGRMC2O15173 223 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 S100A9P06702 114 aaKnown RBP10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 GSSP48637 474 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 AQP4P55087 323 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 WSCD1Q658N2 575 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 MACC1Q6ZN28 852 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 HPS6Q86YV9 775 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 FNDC11Q9BVV2 318 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 MTFR1LQ9H019 292 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 TAS2R7Q9NYW3 318 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 SFMBT1Q9UHJ3 866 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 CNOT11Q9UKZ1 510 aaKnown RBP10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 TTLL13PA6NNM8 815 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 MATN3O15232 486 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 CHRNB2P17787 502 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 SRSF11Q05519 484 aaKnown RBP10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 KCNJ11Q14654 390 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 DNAAF5Q86Y56 855 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 LINGO1Q96FE5 620 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 FBXL18Q96ME1 805 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 ZNF599Q96NL3 588 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 PIF1Q9H611 641 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 ARHGEF4Q9NR80 690 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 TRAV19A0A0A6YYK7 116 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 FAM86C2PA6NEL3 165 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 ANGPTL1O95841 491 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 BDNFP23560 247 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 UGT1A5P35504 534 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 CCT3P49368 545 aaKnown RBP10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 ZNF157P51786 506 aaPredicted RBP10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 PYDC2Q56P42 97 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 RNF220Q5VTB9 566 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 ALDH16A1Q8IZ83 802 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 AGO1Q9UL18 857 aaKnown RBP10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 LYPLA1O75608 230 aaPredicted RBP10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 STK16O75716 305 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 C8GP07360 202 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 CDH1P12830 882 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 SCNN1GP51170 649 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 SPIBQ01892 262 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 HECTD2Q5U5R9 776 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 ARMC8Q8IUR7 673 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 CBR4Q8N4T8 237 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 NAT8LQ8N9F0 302 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 BCL7BQ9BQE9 202 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 NFKBIZQ9BYH8 718 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 KLHL1Q9NR64 748 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 CNTN3Q9P232 1028 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 RREB1Q92766 1687 aa10.24□□□□□ -0.77
CCDC88A-202ENST00000336838 OR6B1O95007 311 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 PTGER3P43115 390 aa10.23□□□□□ -0.77
CCDC88A-202ENST00000336838 CDH4P55283 916 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms