RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 AGBL4Q5VU57 503 aa14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 LDB1Q86U70 411 aaPredicted RBP14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 SERPINA9Q86WD7 417 aa14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 SLC41A1Q8IVJ1 513 aa14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 RBFAQ8N0V3 343 aa14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 SYNPOQ8N3V7 929 aa14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 ZNF398Q8TD17 642 aa14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 CKAP2Q8WWK9 683 aa14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 FAM3CQ92520 227 aa14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 KCNJ9Q92806 393 aa14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 DTD2Q96FN9 168 aa14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 ATXN7L3BQ96GX2 97 aa14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 ELMO2Q96JJ3 720 aa14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 BIRC8Q96P09 236 aa14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 OLFM1Q99784 485 aa14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 ZSCAN5AQ9BUG6 496 aa14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 VPS11Q9H270 941 aa14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 FAM83DQ9H4H8 585 aa14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 ASB8Q9H765 288 aa14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 KCTD5Q9NXV2 234 aa14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 MED16Q9Y2X0 877 aa14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 FADS3Q9Y5Q0 445 aa14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 BPTFQ12830 3046 aa14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 C19orf67A6NJJ6 358 aa14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 H3BMM5 538 aa14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 TSPAN6O43657 245 aa14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 PKMP14618 531 aaKnown RBP14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 HOXB2P14652 356 aa14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 ZNF7P17097 686 aaPredicted RBP14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 LSP1P33241 339 aa14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 LIG3P49916 1009 aa14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 CDKN1CP49918 316 aaPredicted RBP14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 SLC12A2P55011 1212 aa14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 SEC13P55735 322 aa14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 TIAL1Q01085 375 aaKnown RBP eCLIP14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 IL9RQ01113 521 aa14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 DPTQ07507 201 aa14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 CNTN1Q12860 1018 aa14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 TSNAXIP1Q2TAA8 658 aa14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 PPM1JQ5JR12 505 aa14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 EOGTQ5NDL2 527 aa14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 CEP97Q8IW35 865 aa14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 CENPLQ8N0S6 344 aaPredicted RBP14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 AADATQ8N5Z0 425 aa14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 GPATCH11Q8N954 259 aa14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 ANKRD42Q8N9B4 389 aa14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 UBXN10Q96LJ8 280 aa14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 VPS35Q96QK1 796 aa14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 IQCGQ9H095 443 aaKnown RBP14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 CAB39LQ9H9S4 337 aa14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 ZDHHC4Q9NPG8 344 aa14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 ZDHHC3Q9NYG2 299 aa14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 SLC17A7Q9P2U7 560 aa14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 TLK1Q9UKI8 766 aa14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 EMCNQ9ULC0 261 aa14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 MMP17Q9ULZ9 603 aa14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 ACOT9Q9Y305 439 aa14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 OAS3Q9Y6K5 1087 aaKnown RBP14.82□□□□□ -0.04
CCDC88C-202ENST00000334448 CCDC189A1A4V9 331 aa14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 CHURC1-FNTBB4DL54 471 aa14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 WNT9AO14904 365 aa14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 MID1O15344 667 aa14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 PLIN3O60664 434 aa14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 KLF8O95600 359 aaPredicted RBP14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 PROCP04070 461 aa14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 APOA4P06727 396 aa14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 WASP42768 502 aa14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 CDKN2DP55273 166 aa14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 GNGT1P63211 74 aa14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 SEMG2Q02383 582 aa14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 PDK4Q16654 411 aa14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 POM121L1PQ3SYA9 428 aa14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 CCDC153Q494R4 210 aa14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 KIAA1211LQ6NV74 962 aa14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 LVRNQ6Q4G3 990 aa14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 ZNF852Q6ZMS4 543 aa14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 MACC1Q6ZN28 852 aa14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 RFLNAQ6ZTI6 216 aa14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 Q6ZVL8 140 aa14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 USP30Q70CQ3 517 aa14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 TXNDC5Q8NBS9 432 aaKnown RBP14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 MAFAQ8NHW3 353 aaPredicted RBP14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 HEXDCQ8WVB3 486 aa14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 MAGEB18Q96M61 343 aa14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 GPR78Q96P69 363 aa14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 NDNQ99608 321 aa14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 SLC13A1Q9BZW2 595 aa14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 MKRN2Q9H000 416 aaKnown RBP14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 KLHL42Q9P2K6 505 aa14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 WNT16Q9UBV4 365 aa14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 SORCS3Q9UPU3 1222 aa14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 ITM2BQ9Y287 266 aa14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 CRYL1Q9Y2S2 319 aa14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 UNC80Q8N2C7 3258 aa14.81□□□□□ -0.04
CCDC88C-202ENST00000334448 GOLGA8CPA6NN73 597 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 A8MX80 341 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 BIRC5O15392 142 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 PHGDHO43175 533 aaKnown RBP14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 KLHL2O95198 593 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 C6P13671 934 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms