RNA–Protein interactions for RNA: ENST00000325599.12

SHQ1-201, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHQ1, Length 2,879 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-201ENST00000325599 SUPT3HB4E1H0 165 aa16.29■□□□□ 0.2
SHQ1-201ENST00000325599 CDC7O00311 574 aa16.29■□□□□ 0.2
SHQ1-201ENST00000325599 AP1G1O43747 822 aa16.29■□□□□ 0.2
SHQ1-201ENST00000325599 SRP72O76094 671 aaKnown RBP16.29■□□□□ 0.2
SHQ1-201ENST00000325599 PABPC4LP0CB38 370 aaKnown RBP16.29■□□□□ 0.2
SHQ1-201ENST00000325599 NAT1P18440 290 aa16.29■□□□□ 0.2
SHQ1-201ENST00000325599 CHRM3P20309 590 aa16.29■□□□□ 0.2
SHQ1-201ENST00000325599 EEF1DP29692 281 aaKnown RBP16.29■□□□□ 0.2
SHQ1-201ENST00000325599 SLC11A1P49279 550 aa16.29■□□□□ 0.2
SHQ1-201ENST00000325599 SGSHP51688 502 aa16.29■□□□□ 0.2
SHQ1-201ENST00000325599 RING1Q06587 406 aa16.29■□□□□ 0.2
SHQ1-201ENST00000325599 SREBF2Q12772 1141 aa16.29■□□□□ 0.2
SHQ1-201ENST00000325599 C8orf82Q6P1X6 216 aaPredicted RBP16.29■□□□□ 0.2
SHQ1-201ENST00000325599 CCDC80Q76M96 950 aa16.29■□□□□ 0.2
SHQ1-201ENST00000325599 HERC6Q8IVU3 1022 aa16.29■□□□□ 0.2
SHQ1-201ENST00000325599 SLC15A3Q8IY34 581 aa16.29■□□□□ 0.2
SHQ1-201ENST00000325599 SLC30A3Q99726 388 aa16.29■□□□□ 0.2
SHQ1-201ENST00000325599 PFDN4Q9NQP4 134 aa16.29■□□□□ 0.2
SHQ1-201ENST00000325599 LZTS1Q9Y250 596 aa16.29■□□□□ 0.2
SHQ1-201ENST00000325599 TIMM22Q9Y584 194 aa16.29■□□□□ 0.2
SHQ1-201ENST00000325599 SNX13Q9Y5W8 968 aa16.29■□□□□ 0.2
SHQ1-201ENST00000325599 A0A1B0GTW7 788 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 ADAM12O43184 909 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 PRDX3P30048 256 aaKnown RBP16.28■□□□□ 0.2
SHQ1-201ENST00000325599 OXCT1P55809 520 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 STX1BP61266 288 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 TSNQ15631 228 aaKnown RBP16.28■□□□□ 0.2
SHQ1-201ENST00000325599 RNF180Q86T96 592 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 PHYKPLQ8IUZ5 450 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 CATSPER1Q8NEC5 780 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 ESAMQ96AP7 390 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 Q9H521 79 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 GBF1Q92538 1859 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 LSM1O15116 133 aaKnown RBP16.28■□□□□ 0.2
SHQ1-201ENST00000325599 PRLP01236 227 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 ZDHHC11BP0C7U3 371 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 ATP6V1B1P15313 513 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 CAPN3P20807 821 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 AGTR2P50052 363 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 ZNF140P52738 457 aaPredicted RBP16.28■□□□□ 0.2
SHQ1-201ENST00000325599 CAPRIN1Q14444 709 aaKnown RBP16.28■□□□□ 0.2
SHQ1-201ENST00000325599 DENND1CQ8IV53 801 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 TUBGCP3Q96CW5 907 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 GLT1D1Q96MS3 346 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 PHF12Q96QT6 1004 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 MGME1Q9BQP7 344 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 PCDHGC4Q9Y5F7 938 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 SLC38A8A6NNN8 435 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 ZNF839A8K0R7 811 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 ENPP3O14638 875 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 ACSL4O60488 711 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 ALDH2P05091 517 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 TFAP2AP05549 437 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 FGF4P08620 206 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 RPL17P18621 184 aaKnown RBP16.28■□□□□ 0.2
SHQ1-201ENST00000325599 HOXD12P35452 270 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 ACADVLP49748 655 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 TYSND1Q2T9J0 566 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 MTX3Q5HYI7 312 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 KANK2Q63ZY3 851 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 FUT10Q6P4F1 479 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 GLT6D1Q7Z4J2 308 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 NANOGNBQ7Z5D8 188 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 RAB44Q7Z6P3 723 aaPredicted RBP16.28■□□□□ 0.2
SHQ1-201ENST00000325599 PIP4K2CQ8TBX8 421 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 LZICQ8WZA0 190 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 GPR21Q99679 349 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 SLC29A1Q99808 456 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 CINPQ9BW66 212 aaPredicted RBP16.28■□□□□ 0.2
SHQ1-201ENST00000325599 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.28■□□□□ 0.2
SHQ1-201ENST00000325599 TFB2MQ9H5Q4 396 aaKnown RBP16.28■□□□□ 0.2
SHQ1-201ENST00000325599 NOL11Q9H8H0 719 aaKnown RBP16.28■□□□□ 0.2
SHQ1-201ENST00000325599 BPIFA1Q9NP55 256 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 NLE1Q9NVX2 485 aaPredicted RBP16.28■□□□□ 0.2
SHQ1-201ENST00000325599 TMEM161AQ9NX61 479 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 RNF112Q9ULX5 631 aa16.28■□□□□ 0.2
SHQ1-201ENST00000325599 THSD7BQ9C0I4 1608 aa16.27■□□□□ 0.2
SHQ1-201ENST00000325599 H3BNC9 293 aa16.27■□□□□ 0.2
SHQ1-201ENST00000325599 OR1I1O60431 355 aa16.27■□□□□ 0.2
SHQ1-201ENST00000325599 ECI2O75521 394 aa16.27■□□□□ 0.2
SHQ1-201ENST00000325599 HGFP14210 728 aa16.27■□□□□ 0.2
SHQ1-201ENST00000325599 OGNP20774 298 aaKnown RBP16.27■□□□□ 0.2
SHQ1-201ENST00000325599 CLCQ05315 142 aa16.27■□□□□ 0.2
SHQ1-201ENST00000325599 MAP7D1Q3KQU3 841 aa16.27■□□□□ 0.2
SHQ1-201ENST00000325599 SAMD4BQ5PRF9 694 aaKnown RBP16.27■□□□□ 0.2
SHQ1-201ENST00000325599 HMBOX1Q6NT76 420 aa16.27■□□□□ 0.2
SHQ1-201ENST00000325599 SCIMPQ6UWF3 145 aa16.27■□□□□ 0.2
SHQ1-201ENST00000325599 PIANPQ8IYJ0 282 aa16.27■□□□□ 0.2
SHQ1-201ENST00000325599 RHEBL1Q8TAI7 183 aa16.27■□□□□ 0.2
SHQ1-201ENST00000325599 PEX13Q92968 403 aa16.27■□□□□ 0.2
SHQ1-201ENST00000325599 PRICKLE1Q96MT3 831 aaPredicted RBP16.27■□□□□ 0.2
SHQ1-201ENST00000325599 CASD1Q96PB1 797 aa16.27■□□□□ 0.2
SHQ1-201ENST00000325599 PRPF18Q99633 342 aaKnown RBP16.27■□□□□ 0.2
SHQ1-201ENST00000325599 NACA2Q9H009 215 aa16.27■□□□□ 0.2
SHQ1-201ENST00000325599 GKN1Q9NS71 199 aa16.27■□□□□ 0.2
SHQ1-201ENST00000325599 CIDEBQ9UHD4 219 aa16.27■□□□□ 0.2
SHQ1-201ENST00000325599 POLG2Q9UHN1 485 aa16.27■□□□□ 0.2
SHQ1-201ENST00000325599 TCRBV3S1A0A5B6 114 aa16.27■□□□□ 0.19
SHQ1-201ENST00000325599 NME4O00746 187 aa16.27■□□□□ 0.19
SHQ1-201ENST00000325599 SCAMP3O14828 347 aaKnown RBP16.27■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms