RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 SPAM1P38567 509 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 ACTR3P61158 418 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 ENPEPQ07075 957 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 C9orf64Q5T6V5 341 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 CRTC3Q6UUV7 619 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 C1orf127Q8N9H9 656 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 NETO2Q8NC67 525 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 FAM13CQ8NE31 585 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 GPR152Q8TDT2 470 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 ADAMTS15Q8TE58 950 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 DQX1Q8TE96 717 aaKnown RBP13.51□□□□□ -0.25
SF3A1-201ENST00000215793 PIH1D2Q8WWB5 315 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 CHRAC1Q9NRG0 131 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 INTS7Q9NVH2 962 aaKnown RBP13.51□□□□□ -0.25
SF3A1-201ENST00000215793 CFAP97Q9P2B7 532 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 NPEPPSL1A6NEC2 478 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 DNAJA2O60884 412 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 CST3P01034 146 aaPredicted RBP13.51□□□□□ -0.25
SF3A1-201ENST00000215793 CTSKP43235 329 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 POLR2JP52435 117 aaKnown RBP13.51□□□□□ -0.25
SF3A1-201ENST00000215793 CACNG1Q06432 222 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 ITGA7Q13683 1181 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 LPIN1Q14693 890 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 LLGL2Q6P1M3 1020 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 LRRC17Q8N6Y2 441 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 OR2T34Q8NGX1 318 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 OR2T3Q8NH03 318 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 KCTD15Q96SI1 283 aaPredicted RBP13.51□□□□□ -0.25
SF3A1-201ENST00000215793 S100A14Q9HCY8 104 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 MIOSQ9NXC5 875 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 DEC1Q9P2X7 70 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 DMTF1Q9Y222 760 aa13.51□□□□□ -0.25
SF3A1-201ENST00000215793 E9PAM4 449 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 SSNA1O43805 119 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 ARL2P36404 184 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 OTOP3Q7RTS5 596 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 PEX5LQ8IYB4 626 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 C12orf50Q8NA57 414 aaPredicted RBP13.5□□□□□ -0.25
SF3A1-201ENST00000215793 AP2M1Q96CW1 435 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 FAXDC2Q96IV6 333 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 FAM84AQ96KN4 292 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 WDR12Q9GZL7 423 aaKnown RBP13.5□□□□□ -0.25
SF3A1-201ENST00000215793 GOLGA2P5Q9HBQ8 144 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 IMP3Q9NV31 184 aaKnown RBP13.5□□□□□ -0.25
SF3A1-201ENST00000215793 NT5C1B-RDH14C9J2C7 533 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 PER2O15055 1255 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 NOL4O94818 638 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 OMPP47874 163 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 SLC5A3P53794 718 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 SLC5A9Q2M3M2 681 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 FAM171BQ6P995 826 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 GK5Q6ZS86 529 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 PHYKPLQ8IUZ5 450 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 TMEM139Q8IV31 216 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 MAB21L3Q8N8X9 362 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 OR6K2Q8NGY2 324 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 SLC9A7Q96T83 725 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 SDCBP2Q9H190 292 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 NUDT4Q9NZJ9 180 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 MAT2BQ9NZL9 334 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 GMIPQ9P107 970 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 KIF20BQ96Q89 1820 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 OGNP20774 298 aaKnown RBP13.5□□□□□ -0.25
SF3A1-201ENST00000215793 TACR2P21452 398 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 CORO1AP31146 461 aaKnown RBP13.5□□□□□ -0.25
SF3A1-201ENST00000215793 ACLYP53396 1101 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 PTGES3Q15185 160 aaKnown RBP13.5□□□□□ -0.25
SF3A1-201ENST00000215793 SLC1A5Q15758 541 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 DEFB115Q30KQ5 88 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 EML3Q32P44 896 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 TMEM63BQ5T3F8 832 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 PGAM4Q8N0Y7 254 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 ZBTB2Q8N680 514 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 ATAD1Q8NBU5 361 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 NXNL1Q96CM4 212 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 MCMBPQ9BTE3 642 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 SEC14L3Q9UDX4 400 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 NEDD8-MDP1E9PL57 170 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 SCN2BO60939 215 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 FKTNO75072 461 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 CBFA2T3O75081 653 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 TIPRLO75663 272 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 SLURP2P0DP57 97 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 PRKAR1AP10644 381 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 PBX3P40426 434 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 MBTD1Q05BQ5 628 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 LCP2Q13094 533 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 ACAP2Q15057 778 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 TREML2Q5T2D2 321 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 RBM15BQ8NDT2 890 aaKnown RBP13.5□□□□□ -0.25
SF3A1-201ENST00000215793 OR10G6Q8NH81 332 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 TWIST2Q8WVJ9 160 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 PPM1MQ96MI6 270 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 CHID1Q9BWS9 393 aa13.5□□□□□ -0.25
SF3A1-201ENST00000215793 NOL11Q9H8H0 719 aaKnown RBP13.5□□□□□ -0.25
SF3A1-201ENST00000215793 PPP1R11O60927 126 aaPredicted RBP13.49□□□□□ -0.25
SF3A1-201ENST00000215793 CLDN9O95484 217 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 NADKO95544 446 aaPredicted RBP13.49□□□□□ -0.25
SF3A1-201ENST00000215793 UGT2B4P06133 528 aa13.49□□□□□ -0.25
SF3A1-201ENST00000215793 ITPKAP23677 461 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms