RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 TBX20Q9UMR3 447 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ADGRA2Q96PE1 1338 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 POLR3AO14802 1390 aaPredicted RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 TRPM1Q7Z4N2 1603 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 HSFX4A0A1B0GTS1 333 aaPredicted RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 HSFX3A0A1B0GWH4 333 aaPredicted RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ZSCAN5BA6NJL1 495 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 NDUFA10O95299 355 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 GJB6O95452 261 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 MMP10P09238 476 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 IRF1P10914 325 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 IFI30P13284 250 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 TCN1P20061 433 aaPredicted RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 CDH4P55283 916 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 PRDM15P57071 1507 aaPredicted RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 BCL2L1Q07817 233 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 DOC2BQ14184 412 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 PERM1Q5SV97 790 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ZFP1Q6P2D0 407 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 FAM92BQ6ZTR7 304 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 PRICKLE2Q7Z3G6 844 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 PLEKHH3Q7Z736 793 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ZSCAN2Q7Z7L9 614 aaPredicted RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 TMEM17Q86X19 198 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 CCNJLQ8IV13 435 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 PHF6Q8IWS0 365 aaKnown RBP eCLIP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 SP8Q8IXZ3 490 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 COLGALT1Q8NBJ5 622 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 MYO3AQ8NEV4 1616 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 FAM122AQ96E09 287 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 CMKLR1Q99788 373 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 SSX3Q99909 188 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 C7orf50Q9BRJ6 194 aaKnown RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 SLC39A3Q9BRY0 314 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 NDC1Q9BTX1 674 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ABHD16BQ9H3Z7 469 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 EPB41L1Q9H4G0 881 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 TMEM184CQ9NVA4 438 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 SCML1Q9UN30 329 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 PCDH15Q96QU1 1955 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 CEP170Q5SW79 1584 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 RIC1Q4ADV7 1423 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 TCAF2A6NFQ2 919 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 HSBP1L1C9JCN9 74 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 C2CD2LO14523 706 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 FTH1P02794 183 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 WEE2P0C1S8 567 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 CHRM1P11229 460 aaPredicted RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 RAB13P51153 203 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 E2F2Q14209 437 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 MAN2A1Q16706 1144 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 OGFRL1Q5TC84 451 aaPredicted RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 COMTD1Q86VU5 262 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 MREGQ8N565 214 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 WDSUB1Q8N9V3 476 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ATOH1Q92858 354 aaPredicted RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 COX4I2Q96KJ9 171 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 TRIB1Q96RU8 372 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ACOXLQ9NUZ1 547 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 GIN1Q9NXP7 522 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 TBC1D24Q9ULP9 559 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 SAMD4AQ9UPU9 718 aaKnown RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 TPRKBQ9Y3C4 175 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 H3BQF6 201 aa2.78□□□□□ -1.97
SCN1A-219ENST00000641575 AIPO00170 330 aa2.78□□□□□ -1.97
SCN1A-219ENST00000641575 UBFD1O14562 309 aaKnown RBP2.78□□□□□ -1.97
SCN1A-219ENST00000641575 PLOD3O60568 738 aa2.78□□□□□ -1.97
SCN1A-219ENST00000641575 ALDOBP05062 364 aa2.78□□□□□ -1.97
SCN1A-219ENST00000641575 ALPIP09923 528 aa2.78□□□□□ -1.97
SCN1A-219ENST00000641575 PSKH1P11801 424 aa2.78□□□□□ -1.97
SCN1A-219ENST00000641575 RPL17P18621 184 aaKnown RBP2.78□□□□□ -1.97
SCN1A-219ENST00000641575 HNF4AP41235 474 aa2.78□□□□□ -1.97
SCN1A-219ENST00000641575 CBLBQ13191 982 aa2.78□□□□□ -1.97
SCN1A-219ENST00000641575 ADAM9Q13443 819 aa2.78□□□□□ -1.97
SCN1A-219ENST00000641575 NKX1-1Q15270 411 aaPredicted RBP2.78□□□□□ -1.97
SCN1A-219ENST00000641575 ZBTB6Q15916 424 aa2.78□□□□□ -1.97
SCN1A-219ENST00000641575 RNF151Q2KHN1 245 aa2.78□□□□□ -1.97
SCN1A-219ENST00000641575 CRB2Q5IJ48 1285 aa2.78□□□□□ -1.97
SCN1A-219ENST00000641575 SLFN13Q68D06 897 aa2.78□□□□□ -1.97
SCN1A-219ENST00000641575 HAGHLQ6PII5 290 aaPredicted RBP2.78□□□□□ -1.97
SCN1A-219ENST00000641575 DNM1P34Q6PK57 102 aa2.78□□□□□ -1.97
SCN1A-219ENST00000641575 LAPTM4BQ86VI4 370 aa2.78□□□□□ -1.97
SCN1A-219ENST00000641575 SYNE4Q8N205 404 aa2.78□□□□□ -1.97
SCN1A-219ENST00000641575 DNAJA4Q8WW22 397 aaPredicted RBP2.78□□□□□ -1.97
SCN1A-219ENST00000641575 LXNQ9BS40 222 aa2.78□□□□□ -1.97
SCN1A-219ENST00000641575 C9orf16Q9BUW7 83 aa2.78□□□□□ -1.97
SCN1A-219ENST00000641575 ACTRT3Q9BYD9 372 aa2.78□□□□□ -1.97
SCN1A-219ENST00000641575 SLC2A11Q9BYW1 496 aa2.78□□□□□ -1.97
SCN1A-219ENST00000641575 NANOGQ9H9S0 305 aa2.78□□□□□ -1.97
SCN1A-219ENST00000641575 ZCCHC17Q9NP64 241 aaKnown RBP2.78□□□□□ -1.97
SCN1A-219ENST00000641575 PIH1D3Q9NQM4 214 aaKnown RBP2.78□□□□□ -1.97
SCN1A-219ENST00000641575 TMEM260Q9NX78 707 aa2.78□□□□□ -1.97
SCN1A-219ENST00000641575 PRKAG3Q9UGI9 489 aa2.78□□□□□ -1.97
SCN1A-219ENST00000641575 CHORDC1Q9UHD1 332 aaPredicted RBP2.78□□□□□ -1.97
SCN1A-219ENST00000641575 OGDHLQ9ULD0 1010 aa2.78□□□□□ -1.97
SCN1A-219ENST00000641575 UBQLN1Q9UMX0 589 aaKnown RBP2.78□□□□□ -1.97
SCN1A-219ENST00000641575 WASF2Q9Y6W5 498 aa2.78□□□□□ -1.97
SCN1A-219ENST00000641575 HEATR9A2RTY3 570 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 NPIPA7E9PJI5 369 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 FOXN3O00409 490 aaPredicted RBP2.77□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms