RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 COL16A1Q07092 1604 aaPredicted RBP5□□□□□ -1.61
SCN1A-218ENST00000640036 PAPPAQ13219 1627 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 A0A1W2PQC6 194 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 FAM205CA6NFA0 338 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 KCNK1O00180 336 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 C22orf31O95567 290 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 FAM163BP0C2L3 166 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 HNRNPA2B1P22626 353 aaKnown RBP5□□□□□ -1.61
SCN1A-218ENST00000640036 SLC7A2P52569 658 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 GTF2BQ00403 316 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 SIGLEC14Q08ET2 396 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 PUM1Q14671 1186 aaKnown RBP eCLIP5□□□□□ -1.61
SCN1A-218ENST00000640036 DUPD1Q68J44 220 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 NEK5Q6P3R8 708 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 TMEM220Q6QAJ8 160 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 FAM151BQ6UXP7 276 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 CERS6Q6ZMG9 384 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 MFSD6LQ8IWD5 586 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 UNC5BQ8IZJ1 945 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 MPP5Q8N3R9 675 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 SLC35G2Q8TBE7 412 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 EMID1Q96A84 441 aaPredicted RBP5□□□□□ -1.61
SCN1A-218ENST00000640036 MTERF3Q96E29 417 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 TOE1Q96GM8 510 aaKnown RBP5□□□□□ -1.61
SCN1A-218ENST00000640036 PPCSQ9HAB8 311 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 NMUR1Q9HB89 426 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 PCDH9Q9HC56 1237 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 EXD2Q9NVH0 621 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 TMCO1Q9UM00 188 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 DNMT3AQ9Y6K1 912 aaPredicted RBP5□□□□□ -1.61
SCN1A-218ENST00000640036 COL3A1P02461 1466 aaPredicted RBP5□□□□□ -1.61
SCN1A-218ENST00000640036 RGPD5Q99666 1765 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 GLYATL1P3A0A0U1RQE8 302 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 CIB4A0PJX0 185 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 MYBPHLA2RUH7 354 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 C5orf60A6NFR6 353 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 RNGTTO60942 597 aaKnown RBP5□□□□□ -1.61
SCN1A-218ENST00000640036 KHDRBS3O75525 346 aaKnown RBP5□□□□□ -1.61
SCN1A-218ENST00000640036 ERAL1O75616 437 aaKnown RBP5□□□□□ -1.61
SCN1A-218ENST00000640036 WARSP23381 471 aaKnown RBP5□□□□□ -1.61
SCN1A-218ENST00000640036 IFNGR2P38484 337 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 CCNFP41002 786 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 CSKP41240 450 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 FOLR3P41439 243 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 VSNL1P62760 191 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 ZNF33AQ06730 810 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 SPEM2Q0P670 501 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 PRKG2Q13237 762 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 KCNT1Q5JUK3 1230 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 ASTLQ6HA08 431 aaPredicted RBP5□□□□□ -1.61
SCN1A-218ENST00000640036 LINGO4Q6UY18 593 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 ABHD13Q7L211 337 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 UBE2J2Q8N2K1 259 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 SYNPOQ8N3V7 929 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 SERBP1Q8NC51 408 aaKnown RBP eCLIP5□□□□□ -1.61
SCN1A-218ENST00000640036 CCDC197Q8NCU1 140 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 ATP6V1C2Q8NEY4 427 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 ECSITQ9BQ95 431 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 SPATA5L1Q9BVQ7 753 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 ERVK-5Q9HDB9 667 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 CDC23Q9UJX2 597 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 KCNU1A8MYU2 1149 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 H0YJX3 145 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 ATP8B1O43520 1251 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 B3GALT2O43825 422 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 SDC3O75056 442 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 SPAG7O75391 227 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 CAPN1P07384 714 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 ABCB1P08183 1280 aaPredicted RBP5□□□□□ -1.61
SCN1A-218ENST00000640036 IL10P22301 178 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 S100A1P23297 94 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 PIK3CBP42338 1070 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 MBTD1Q05BQ5 628 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 RFTN1Q14699 578 aaPredicted RBP5□□□□□ -1.61
SCN1A-218ENST00000640036 DHCR24Q15392 516 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 NR6A1Q15406 480 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 KIAA1161Q6NSJ0 714 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 PMF1Q6P1K2 205 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 CEACAM20Q6UY09 585 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 ANKRD33Q7Z3H0 272 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 TC2NQ8N9U0 490 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 CPT1BQ92523 772 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 BORCS6Q96GS4 357 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 HIST1H2AAQ96QV6 131 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 DEFB126Q9BYW3 111 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 PNO1Q9NRX1 252 aaKnown RBP5□□□□□ -1.61
SCN1A-218ENST00000640036 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP5□□□□□ -1.61
SCN1A-218ENST00000640036 RAI2Q9Y5P3 530 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 HS3ST4Q9Y661 456 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 MTMR11A4FU01 709 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 FOXN3O00409 490 aaPredicted RBP5□□□□□ -1.61
SCN1A-218ENST00000640036 CTIFO43310 598 aaKnown RBP5□□□□□ -1.61
SCN1A-218ENST00000640036 SRPRAP08240 638 aaKnown RBP5□□□□□ -1.61
SCN1A-218ENST00000640036 H2AFXP16104 143 aaPredicted RBP5□□□□□ -1.61
SCN1A-218ENST00000640036 DRD4P21917 467 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 TALDO1P37837 337 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 RPS7P62081 194 aaKnown RBP5□□□□□ -1.61
SCN1A-218ENST00000640036 MPP3Q13368 585 aa5□□□□□ -1.61
SCN1A-218ENST00000640036 MRPL49Q13405 166 aaKnown RBP5□□□□□ -1.61
SCN1A-218ENST00000640036 CST6Q15828 149 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 112.1 ms