RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 ZNF135P52742 658 aaPredicted RBP19.28■□□□□ 0.68
CLN3-262ENST00000637699 MC2RQ01718 297 aa19.28■□□□□ 0.68
CLN3-262ENST00000637699 CDC20Q12834 499 aa19.28■□□□□ 0.68
CLN3-262ENST00000637699 DEFB109BQ30KR1 87 aa19.28■□□□□ 0.68
CLN3-262ENST00000637699 LRRC66Q68CR7 880 aa19.28■□□□□ 0.68
CLN3-262ENST00000637699 TMCO3Q6UWJ1 677 aa19.28■□□□□ 0.68
CLN3-262ENST00000637699 TIPARPQ7Z3E1 657 aaKnown RBP19.28■□□□□ 0.68
CLN3-262ENST00000637699 KDELC2Q7Z4H8 507 aa19.28■□□□□ 0.68
CLN3-262ENST00000637699 GALNT13Q8IUC8 556 aa19.28■□□□□ 0.68
CLN3-262ENST00000637699 SFRP1Q8N474 314 aa19.28■□□□□ 0.68
CLN3-262ENST00000637699 NSMCE1Q8WV22 266 aa19.28■□□□□ 0.68
CLN3-262ENST00000637699 PIH1D2Q8WWB5 315 aa19.28■□□□□ 0.68
CLN3-262ENST00000637699 NCSTNQ92542 709 aa19.28■□□□□ 0.68
CLN3-262ENST00000637699 AGAP2Q99490 1192 aa19.28■□□□□ 0.68
CLN3-262ENST00000637699 SYT11Q9BT88 431 aa19.28■□□□□ 0.68
CLN3-262ENST00000637699 SPRY4Q9C004 299 aa19.28■□□□□ 0.68
CLN3-262ENST00000637699 PRKAB1Q9Y478 270 aa19.28■□□□□ 0.68
CLN3-262ENST00000637699 INPP4BO15327 924 aa19.27■□□□□ 0.68
CLN3-262ENST00000637699 ASMTLO95671 621 aa19.27■□□□□ 0.68
CLN3-262ENST00000637699 PDHA1P08559 390 aa19.27■□□□□ 0.68
CLN3-262ENST00000637699 MMP13P45452 471 aa19.27■□□□□ 0.68
CLN3-262ENST00000637699 NFATC2Q13469 925 aa19.27■□□□□ 0.68
CLN3-262ENST00000637699 NCAPHQ15003 741 aa19.27■□□□□ 0.68
CLN3-262ENST00000637699 SMTNL2Q2TAL5 461 aa19.27■□□□□ 0.68
CLN3-262ENST00000637699 CHCHD2P9Q5T1J5 151 aaPredicted RBP19.27■□□□□ 0.68
CLN3-262ENST00000637699 MARC1Q5VT66 337 aa19.27■□□□□ 0.68
CLN3-262ENST00000637699 PPP1R2P3Q6NXS1 205 aa19.27■□□□□ 0.68
CLN3-262ENST00000637699 CEACAM20Q6UY09 585 aa19.27■□□□□ 0.68
CLN3-262ENST00000637699 ARHGAP22Q7Z5H3 698 aa19.27■□□□□ 0.68
CLN3-262ENST00000637699 ATPAF2Q8N5M1 289 aa19.27■□□□□ 0.68
CLN3-262ENST00000637699 APMAPQ9HDC9 416 aa19.27■□□□□ 0.68
CLN3-262ENST00000637699 ZNHIT2Q9UHR6 403 aa19.27■□□□□ 0.68
CLN3-262ENST00000637699 PPIL1Q9Y3C6 166 aa19.27■□□□□ 0.68
CLN3-262ENST00000637699 CDK11BP21127 795 aaKnown RBP19.26■□□□□ 0.67
CLN3-262ENST00000637699 OAS2P29728 719 aaKnown RBP19.26■□□□□ 0.67
CLN3-262ENST00000637699 ARL4AP40617 200 aa19.26■□□□□ 0.67
CLN3-262ENST00000637699 MAPK9P45984 424 aa19.26■□□□□ 0.67
CLN3-262ENST00000637699 HHEXQ03014 270 aa19.26■□□□□ 0.67
CLN3-262ENST00000637699 PTSQ03393 145 aa19.26■□□□□ 0.67
CLN3-262ENST00000637699 LRP8Q14114 963 aa19.26■□□□□ 0.67
CLN3-262ENST00000637699 RALGPS1Q5JS13 557 aa19.26■□□□□ 0.67
CLN3-262ENST00000637699 C16orf46Q6P387 395 aa19.26■□□□□ 0.67
CLN3-262ENST00000637699 WDR74Q6RFH5 385 aaPredicted RBP19.26■□□□□ 0.67
CLN3-262ENST00000637699 CHST15Q7LFX5 561 aaPredicted RBP19.26■□□□□ 0.67
CLN3-262ENST00000637699 NDUFAF2Q8N183 169 aa19.26■□□□□ 0.67
CLN3-262ENST00000637699 APOBEC4Q8WW27 367 aaKnown RBP19.26■□□□□ 0.67
CLN3-262ENST00000637699 HSPH1Q92598 858 aa19.26■□□□□ 0.67
CLN3-262ENST00000637699 ABHD17AQ96GS6 310 aa19.26■□□□□ 0.67
CLN3-262ENST00000637699 EFHD1Q9BUP0 239 aa19.26■□□□□ 0.67
CLN3-262ENST00000637699 NT5MQ9NPB1 228 aa19.26■□□□□ 0.67
CLN3-262ENST00000637699 FBXO8Q9NRD0 319 aa19.26■□□□□ 0.67
CLN3-262ENST00000637699 CNOT8Q9UFF9 292 aaKnown RBP19.26■□□□□ 0.67
CLN3-262ENST00000637699 KLHL3Q9UH77 587 aa19.26■□□□□ 0.67
CLN3-262ENST00000637699 PCYT1BQ9Y5K3 369 aaPredicted RBP19.26■□□□□ 0.67
CLN3-262ENST00000637699 STK17BO94768 372 aa19.25■□□□□ 0.67
CLN3-262ENST00000637699 FTLP02792 175 aaPredicted RBP19.25■□□□□ 0.67
CLN3-262ENST00000637699 IL1R2P27930 398 aa19.25■□□□□ 0.67
CLN3-262ENST00000637699 MAN1A1P33908 653 aa19.25■□□□□ 0.67
CLN3-262ENST00000637699 ITKQ08881 620 aa19.25■□□□□ 0.67
CLN3-262ENST00000637699 DPYSL2Q16555 572 aa19.25■□□□□ 0.67
CLN3-262ENST00000637699 ATP1A1-AS1Q5TC04 95 aa19.25■□□□□ 0.67
CLN3-262ENST00000637699 POLNQ7Z5Q5 900 aa19.25■□□□□ 0.67
CLN3-262ENST00000637699 LURAP1LQ8IV03 231 aa19.25■□□□□ 0.67
CLN3-262ENST00000637699 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP19.25■□□□□ 0.67
CLN3-262ENST00000637699 EXD1Q8NHP7 514 aa19.25■□□□□ 0.67
CLN3-262ENST00000637699 STARD8Q92502 1023 aa19.25■□□□□ 0.67
CLN3-262ENST00000637699 CSPG4P5Q96PW8 444 aa19.25■□□□□ 0.67
CLN3-262ENST00000637699 ZPBPQ9BS86 351 aa19.25■□□□□ 0.67
CLN3-262ENST00000637699 RIOK2Q9BVS4 552 aaKnown RBP19.25■□□□□ 0.67
CLN3-262ENST00000637699 MYO1AQ9UBC5 1043 aa19.25■□□□□ 0.67
CLN3-262ENST00000637699 TBC1D29Q9UFV1 150 aa19.25■□□□□ 0.67
CLN3-262ENST00000637699 LRRC10BA6NIK2 292 aa19.24■□□□□ 0.67
CLN3-262ENST00000637699 NTRK1P04629 796 aa19.24■□□□□ 0.67
CLN3-262ENST00000637699 ATP1A1P05023 1023 aaKnown RBP19.24■□□□□ 0.67
CLN3-262ENST00000637699 GP1BBP13224 206 aa19.24■□□□□ 0.67
CLN3-262ENST00000637699 TCF4P15884 667 aa19.24■□□□□ 0.67
CLN3-262ENST00000637699 TCN2P20062 427 aa19.24■□□□□ 0.67
CLN3-262ENST00000637699 EPHB1P54762 984 aa19.24■□□□□ 0.67
CLN3-262ENST00000637699 CDH6P55285 790 aa19.24■□□□□ 0.67
CLN3-262ENST00000637699 ABHD18Q0P651 414 aa19.24■□□□□ 0.67
CLN3-262ENST00000637699 ZNF765Q7L2R6 523 aa19.24■□□□□ 0.67
CLN3-262ENST00000637699 ZNF653Q96CK0 615 aa19.24■□□□□ 0.67
CLN3-262ENST00000637699 RNF31Q96EP0 1072 aa19.24■□□□□ 0.67
CLN3-262ENST00000637699 COX14Q96I36 57 aa19.24■□□□□ 0.67
CLN3-262ENST00000637699 STN1Q9H668 368 aaKnown RBP19.24■□□□□ 0.67
CLN3-262ENST00000637699 SARS2Q9NP81 518 aaKnown RBP19.24■□□□□ 0.67
CLN3-262ENST00000637699 STAU2Q9NUL3 570 aaKnown RBP eCLIP19.24■□□□□ 0.67
CLN3-262ENST00000637699 PLAAQ9Y263 795 aa19.24■□□□□ 0.67
CLN3-262ENST00000637699 TMEM184BQ9Y519 407 aaPredicted RBP19.24■□□□□ 0.67
CLN3-262ENST00000637699 UTP20O75691 2785 aaKnown RBP19.24■□□□□ 0.67
CLN3-262ENST00000637699 USP9YO00507 2555 aaPredicted RBP19.23■□□□□ 0.67
CLN3-262ENST00000637699 A0A0J9YYE9 177 aa19.23■□□□□ 0.67
CLN3-262ENST00000637699 POLR1CO15160 346 aaPredicted RBP19.23■□□□□ 0.67
CLN3-262ENST00000637699 FZD6O60353 706 aa19.23■□□□□ 0.67
CLN3-262ENST00000637699 SNX2O60749 519 aa19.23■□□□□ 0.67
CLN3-262ENST00000637699 TRBC1P01850 177 aa19.23■□□□□ 0.67
CLN3-262ENST00000637699 PYGLP06737 847 aa19.23■□□□□ 0.67
CLN3-262ENST00000637699 ATP1A3P13637 1013 aa19.23■□□□□ 0.67
CLN3-262ENST00000637699 PCK1P35558 622 aa19.23■□□□□ 0.67
CLN3-262ENST00000637699 NOP2P46087 812 aaKnown RBP19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms