RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 RP1P56715 2156 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 NOBOXO60393 691 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 TCEA3O75764 348 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 PTPN7P35236 360 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 CDK18Q07002 472 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 HENMT1Q5T8I9 393 aaKnown RBP19.15■□□□□ 0.66
CLN3-260ENST00000637578 SLC35F6Q8N357 371 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 OR6C4Q8NGE1 309 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 SPATA22Q8NHS9 363 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 WDR48Q8TAF3 677 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 GRAMD1AQ96CP6 724 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 VAT1Q99536 393 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 CCDC3Q9BQI4 270 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 HERPUD2Q9BSE4 406 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 RIOK2Q9BVS4 552 aaKnown RBP19.15■□□□□ 0.66
CLN3-260ENST00000637578 HEMGNQ9BXL5 484 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 MAGEE1Q9HCI5 957 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 SIRPGQ9P1W8 387 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 SUFUQ9UMX1 484 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 RAXQ9Y2V3 346 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 PCDHB1Q9Y5F3 818 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 COL27A1Q8IZC6 1860 aaPredicted RBP19.14■□□□□ 0.65
CLN3-260ENST00000637578 ZFHX4Q86UP3 3567 aa19.14■□□□□ 0.65
CLN3-260ENST00000637578 GOLGA6CA6NDK9 693 aa19.14■□□□□ 0.65
CLN3-260ENST00000637578 GOLGA6BA6NDN3 693 aa19.14■□□□□ 0.65
CLN3-260ENST00000637578 HACD1B0YJ81 288 aa19.14■□□□□ 0.65
CLN3-260ENST00000637578 APOC4-APOC2K7ER74 178 aa19.14■□□□□ 0.65
CLN3-260ENST00000637578 NTN3O00634 580 aaPredicted RBP19.14■□□□□ 0.65
CLN3-260ENST00000637578 MT-CYBP00156 380 aaPredicted RBP19.14■□□□□ 0.65
CLN3-260ENST00000637578 APOC2P02655 101 aa19.14■□□□□ 0.65
CLN3-260ENST00000637578 GOLGA6DP0CG33 693 aa19.14■□□□□ 0.65
CLN3-260ENST00000637578 POLD2P49005 469 aa19.14■□□□□ 0.65
CLN3-260ENST00000637578 XRCC4Q13426 336 aa19.14■□□□□ 0.65
CLN3-260ENST00000637578 GALNT3Q14435 633 aa19.14■□□□□ 0.65
CLN3-260ENST00000637578 ISXQ2M1V0 245 aa19.14■□□□□ 0.65
CLN3-260ENST00000637578 ZC3H18Q86VM9 953 aaKnown RBP19.14■□□□□ 0.65
CLN3-260ENST00000637578 FAM46DQ8NEK8 389 aa19.14■□□□□ 0.65
CLN3-260ENST00000637578 CCHCR1Q8TD31 782 aa19.14■□□□□ 0.65
CLN3-260ENST00000637578 HIC2Q96JB3 615 aa19.14■□□□□ 0.65
CLN3-260ENST00000637578 QKIQ96PU8 341 aaKnown RBP eCLIP19.14■□□□□ 0.65
CLN3-260ENST00000637578 GOLGA6AQ9NYA3 693 aa19.14■□□□□ 0.65
CLN3-260ENST00000637578 RABGEF1Q9UJ41 708 aa19.14■□□□□ 0.65
CLN3-260ENST00000637578 MOSPD1Q9UJG1 213 aa19.14■□□□□ 0.65
CLN3-260ENST00000637578 CNOT6Q9ULM6 557 aaKnown RBP19.14■□□□□ 0.65
CLN3-260ENST00000637578 ST14Q9Y5Y6 855 aa19.14■□□□□ 0.65
CLN3-260ENST00000637578 CSO75390 466 aaKnown RBP19.13■□□□□ 0.65
CLN3-260ENST00000637578 LYSMD3Q7Z3D4 306 aa19.13■□□□□ 0.65
CLN3-260ENST00000637578 TMC3Q7Z5M5 1100 aa19.13■□□□□ 0.65
CLN3-260ENST00000637578 C17orf82Q86X59 251 aaPredicted RBP19.13■□□□□ 0.65
CLN3-260ENST00000637578 HTR3CQ8WXA8 447 aa19.13■□□□□ 0.65
CLN3-260ENST00000637578 OSBPL8Q9BZF1 889 aa19.13■□□□□ 0.65
CLN3-260ENST00000637578 FAM83DQ9H4H8 585 aa19.13■□□□□ 0.65
CLN3-260ENST00000637578 ZFYVE1Q9HBF4 777 aa19.13■□□□□ 0.65
CLN3-260ENST00000637578 SPATS2LQ9NUQ6 558 aaKnown RBP19.13■□□□□ 0.65
CLN3-260ENST00000637578 PKD2L2Q9NZM6 624 aa19.13■□□□□ 0.65
CLN3-260ENST00000637578 APPL1Q9UKG1 709 aa19.13■□□□□ 0.65
CLN3-260ENST00000637578 JRKLQ9Y4A0 524 aa19.13■□□□□ 0.65
CLN3-260ENST00000637578 GPSM3Q9Y4H4 160 aa19.13■□□□□ 0.65
CLN3-260ENST00000637578 AK5Q9Y6K8 562 aa19.13■□□□□ 0.65
CLN3-260ENST00000637578 URB1O60287 2271 aaKnown RBP19.12■□□□□ 0.65
CLN3-260ENST00000637578 LOC285095A0A1B0GVY8 99 aa19.12■□□□□ 0.65
CLN3-260ENST00000637578 CASC3O15234 703 aaKnown RBP19.12■□□□□ 0.65
CLN3-260ENST00000637578 NDST3O95803 873 aa19.12■□□□□ 0.65
CLN3-260ENST00000637578 EPOP01588 193 aa19.12■□□□□ 0.65
CLN3-260ENST00000637578 PNLIPP16233 465 aa19.12■□□□□ 0.65
CLN3-260ENST00000637578 HLTFQ14527 1009 aaKnown RBP eCLIP19.12■□□□□ 0.65
CLN3-260ENST00000637578 CERCAMQ5T4B2 595 aa19.12■□□□□ 0.65
CLN3-260ENST00000637578 KDELC1Q6UW63 502 aa19.12■□□□□ 0.65
CLN3-260ENST00000637578 RBM44Q6ZP01 1051 aaKnown RBP19.12■□□□□ 0.65
CLN3-260ENST00000637578 KDELC2Q7Z4H8 507 aa19.12■□□□□ 0.65
CLN3-260ENST00000637578 SFTPA2Q8IWL1 248 aa19.12■□□□□ 0.65
CLN3-260ENST00000637578 ZNF567Q8N184 647 aa19.12■□□□□ 0.65
CLN3-260ENST00000637578 CCDC74AQ96AQ1 378 aa19.12■□□□□ 0.65
CLN3-260ENST00000637578 HAUS1Q96CS2 278 aa19.12■□□□□ 0.65
CLN3-260ENST00000637578 TRIM44Q96DX7 344 aaPredicted RBP19.12■□□□□ 0.65
CLN3-260ENST00000637578 FCRL5Q96RD9 977 aa19.12■□□□□ 0.65
CLN3-260ENST00000637578 GSDMCQ9BYG8 508 aa19.12■□□□□ 0.65
CLN3-260ENST00000637578 CDH19Q9H159 772 aa19.12■□□□□ 0.65
CLN3-260ENST00000637578 TMEM98Q9Y2Y6 226 aa19.12■□□□□ 0.65
CLN3-260ENST00000637578 CELSR3Q9NYQ7 3312 aa19.12■□□□□ 0.65
CLN3-260ENST00000637578 FGF1P05230 155 aa19.11■□□□□ 0.65
CLN3-260ENST00000637578 GLB1P16278 677 aa19.11■□□□□ 0.65
CLN3-260ENST00000637578 ADCY8P40145 1251 aa19.11■□□□□ 0.65
CLN3-260ENST00000637578 CETN2P41208 172 aa19.11■□□□□ 0.65
CLN3-260ENST00000637578 GNPDA1P46926 289 aa19.11■□□□□ 0.65
CLN3-260ENST00000637578 ILF3Q12906 894 aaKnown RBP eCLIP19.11■□□□□ 0.65
CLN3-260ENST00000637578 NOMO1Q15155 1222 aa19.11■□□□□ 0.65
CLN3-260ENST00000637578 PCSK7Q16549 785 aa19.11■□□□□ 0.65
CLN3-260ENST00000637578 C14orf28Q4W4Y0 310 aa19.11■□□□□ 0.65
CLN3-260ENST00000637578 PYCR3Q53H96 274 aa19.11■□□□□ 0.65
CLN3-260ENST00000637578 SRPK1Q96SB4 655 aaKnown RBP19.11■□□□□ 0.65
CLN3-260ENST00000637578 DPEP2Q9H4A9 486 aa19.11■□□□□ 0.65
CLN3-260ENST00000637578 VPS18Q9P253 973 aa19.11■□□□□ 0.65
CLN3-260ENST00000637578 NFKBIL1Q9UBC1 381 aaPredicted RBP19.11■□□□□ 0.65
CLN3-260ENST00000637578 FAM153AQ9UHL3 310 aa19.11■□□□□ 0.65
CLN3-260ENST00000637578 TRHDEQ9UKU6 1024 aa19.11■□□□□ 0.65
CLN3-260ENST00000637578 ENTPD2Q9Y5L3 495 aa19.11■□□□□ 0.65
CLN3-260ENST00000637578 LAMA5O15230 3695 aa19.11■□□□□ 0.65
CLN3-260ENST00000637578 A0A087WV48 116 aa19.1■□□□□ 0.65
CLN3-260ENST00000637578 FADS2P1A8MWK0 482 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms