RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 FSCN1Q16658 493 aaKnown RBP3.97□□□□□ -1.77
SCN1A-214ENST00000637038 USP41Q3LFD5 358 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 ZBED5Q49AG3 693 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 PABPC1LQ4VXU2 614 aaKnown RBP3.97□□□□□ -1.77
SCN1A-214ENST00000637038 PPP4R4Q6NUP7 873 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 MAMDC4Q6UXC1 1216 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 AMIGO2Q86SJ2 522 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 PROSER1Q86XN7 944 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 CLVS1Q8IUQ0 354 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-214ENST00000637038 SPATA2LQ8IUW3 424 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-214ENST00000637038 SCML4Q8N228 414 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 ATP6V0D2Q8N8Y2 350 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 KDM1BQ8NB78 822 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 SLC43A3Q8NBI5 491 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 ANKK1Q8NFD2 765 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 ZNF420Q8TAQ5 688 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-214ENST00000637038 MAPK15Q8TD08 544 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 HEXDCQ8WVB3 486 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 BORCS5Q969J3 196 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 C19orf60Q96EN9 201 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 VPS50Q96JG6 964 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 FEM1CQ96JP0 617 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 SLC45A3Q96JT2 553 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 RANBP9Q96S59 729 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 KCTD14Q9BQ13 255 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-214ENST00000637038 NUSAP1Q9BXS6 441 aaKnown RBP3.97□□□□□ -1.77
SCN1A-214ENST00000637038 TRIM54Q9BYV2 358 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 SLC25A51Q9H1U9 297 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 COQ10BQ9H8M1 238 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 CYP4F12Q9HCS2 524 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 RGS18Q9NS28 235 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 TMEM45AQ9NWC5 275 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 UBP1Q9NZI7 540 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 RBPJLQ9UBG7 517 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 CNOT6Q9ULM6 557 aaKnown RBP3.97□□□□□ -1.77
SCN1A-214ENST00000637038 VWA7Q9Y334 891 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 SNX5Q9Y5X3 404 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 CCDC78A2IDD5 438 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 PABPN1LA6NDY0 278 aaKnown RBP3.97□□□□□ -1.77
SCN1A-214ENST00000637038 SAC3D1A6NKF1 404 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 PALM2-AKAP2B1ALY0 433 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-214ENST00000637038 H3BNH8 94 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 GOLGA8TH3BQL2 631 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 IFRD1O00458 451 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-214ENST00000637038 AZIN1O14977 448 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 GSTA4O15217 222 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 DEAF1O75398 565 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-214ENST00000637038 CNMDO75829 334 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 GLP2RO95838 553 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 AHSGP02765 367 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 SMIM18P0DKX4 95 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 BMP2P12643 396 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 EEF1B2P24534 225 aaKnown RBP3.97□□□□□ -1.77
SCN1A-214ENST00000637038 MAP4P27816 1152 aaKnown RBP3.97□□□□□ -1.77
SCN1A-214ENST00000637038 SLC1A2P43004 574 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 PSMD7P51665 324 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 WNT3AP56704 352 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 ATP6V0D1P61421 351 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 USP46P62068 366 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 TMEM62Q0P6H9 643 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 CTBP1Q13363 440 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 TOP3AQ13472 1001 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-214ENST00000637038 APOFQ13790 326 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 NFYCQ13952 458 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 ZNF235Q14590 738 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 MFSD10Q14728 455 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 MTX3Q5HYI7 312 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 GJC2Q5T442 439 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-214ENST00000637038 TSTD2Q5T7W7 516 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 INTS11Q5TA45 600 aaKnown RBP3.97□□□□□ -1.77
SCN1A-214ENST00000637038 MARC1Q5VT66 337 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 IL23RQ5VWK5 629 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 FAM117BQ6P1L5 589 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 TXNDC11Q6PKC3 985 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 LAYNQ6UX15 382 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 ZNF554Q86TJ5 538 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 DCP1BQ8IZD4 617 aaKnown RBP3.97□□□□□ -1.77
SCN1A-214ENST00000637038 LRRC43Q8N309 656 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 RYBPQ8N488 228 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-214ENST00000637038 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP3.97□□□□□ -1.77
SCN1A-214ENST00000637038 ZNF555Q8NEP9 628 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 LRTOMTQ8WZ04 291 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 PEX13Q92968 403 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 EXT2Q93063 718 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 SLC35B4Q969S0 331 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 TUBGCP3Q96CW5 907 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 MAELQ96JY0 434 aaKnown RBP3.97□□□□□ -1.77
SCN1A-214ENST00000637038 MARK4Q96L34 752 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 CCDC138Q96M89 665 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 UROC1Q96N76 676 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 ZMAT2Q96NC0 199 aaKnown RBP3.97□□□□□ -1.77
SCN1A-214ENST00000637038 CNTNAP3BQ96NU0 1288 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 YME1L1Q96TA2 773 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 CNTNAP3Q9BZ76 1288 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 ADAMTS10Q9H324 1103 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 POPDC3Q9HBV1 291 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 ARMC1Q9NVT9 282 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 WNT16Q9UBV4 365 aa3.97□□□□□ -1.77
SCN1A-214ENST00000637038 LEF1Q9UJU2 399 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-214ENST00000637038 PACSIN3Q9UKS6 424 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms