RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 MGME1Q9BQP7 344 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 C1QTNF3Q9BXJ4 246 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 SYTL2Q9HCH5 934 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 TLR8Q9NR97 1041 aaKnown RBP12.72□□□□□ -0.37
LINC00540-203ENST00000631321 PNPLA3Q9NST1 481 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 NLE1Q9NVX2 485 aaPredicted RBP12.72□□□□□ -0.37
LINC00540-203ENST00000631321 GID8Q9NWU2 228 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 DUS2Q9NX74 493 aaKnown RBP12.72□□□□□ -0.37
LINC00540-203ENST00000631321 POLG2Q9UHN1 485 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 MED16Q9Y2X0 877 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 PTGDR2Q9Y5Y4 395 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 SLC12A8A0AV02 714 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 H3BNH8 94 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 PDLIM1O00151 329 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 ASLP04424 464 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 SERPINF2P08697 491 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 RPS17P08708 135 aaKnown RBP12.72□□□□□ -0.37
LINC00540-203ENST00000631321 IDO1P14902 403 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 GRIA3P42263 894 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 ALDH3B2P48448 385 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 FAM189BP81408 668 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 GRIK2Q13002 908 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 GALNT3Q14435 633 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 KCNA10Q16322 511 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 VPS26BQ4G0F5 336 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 TMEM259Q4ZIN3 620 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 PITRM1Q5JRX3 1037 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 C10orf120Q5SQS8 335 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 INTS11Q5TA45 600 aaKnown RBP12.72□□□□□ -0.37
LINC00540-203ENST00000631321 BLOC1S3Q6QNY0 202 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 ZBTB49Q6ZSB9 765 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 MIB1Q86YT6 1006 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 TTC9BQ8N6N2 239 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 MFSD2AQ8NA29 543 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 ATAD1Q8NBU5 361 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 TRPC4APQ8TEL6 797 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 LRCH3Q96II8 777 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 CIB1Q99828 191 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.72□□□□□ -0.37
LINC00540-203ENST00000631321 OLAHQ9NV23 265 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 CMTM6Q9NX76 183 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 ETAA1Q9NY74 926 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 THEGQ9P2T0 379 aa12.72□□□□□ -0.37
LINC00540-203ENST00000631321 ANGPT2O15123 496 aa12.71□□□□□ -0.37
LINC00540-203ENST00000631321 HNRNPRO43390 633 aaKnown RBP12.71□□□□□ -0.37
LINC00540-203ENST00000631321 TIPRLO75663 272 aa12.71□□□□□ -0.37
LINC00540-203ENST00000631321 GFAPP14136 432 aa12.71□□□□□ -0.37
LINC00540-203ENST00000631321 FGFR3P22607 806 aa12.71□□□□□ -0.37
LINC00540-203ENST00000631321 CLCQ05315 142 aa12.71□□□□□ -0.37
LINC00540-203ENST00000631321 SPATA19Q7Z5L4 167 aa12.71□□□□□ -0.37
LINC00540-203ENST00000631321 HM13Q8TCT9 377 aa12.71□□□□□ -0.37
LINC00540-203ENST00000631321 TFAP2CQ92754 450 aa12.71□□□□□ -0.37
LINC00540-203ENST00000631321 SLC45A3Q96JT2 553 aa12.71□□□□□ -0.37
LINC00540-203ENST00000631321 NUSAP1Q9BXS6 441 aaKnown RBP12.71□□□□□ -0.37
LINC00540-203ENST00000631321 RETREG1Q9H6L5 497 aa12.71□□□□□ -0.37
LINC00540-203ENST00000631321 COMMD8Q9NX08 183 aa12.71□□□□□ -0.37
LINC00540-203ENST00000631321 ACTR3BQ9P1U1 418 aa12.71□□□□□ -0.37
LINC00540-203ENST00000631321 GIMAP2Q9UG22 337 aa12.71□□□□□ -0.37
LINC00540-203ENST00000631321 GPR45Q9Y5Y3 372 aa12.71□□□□□ -0.37
LINC00540-203ENST00000631321 CEPT1Q9Y6K0 416 aa12.71□□□□□ -0.37
LINC00540-203ENST00000631321 A0A1B0GTW7 788 aa12.71□□□□□ -0.38
LINC00540-203ENST00000631321 A0A1B0GVG6 124 aa12.71□□□□□ -0.38
LINC00540-203ENST00000631321 OR6C75A6NL08 312 aa12.71□□□□□ -0.38
LINC00540-203ENST00000631321 KLK8O60259 260 aa12.71□□□□□ -0.38
LINC00540-203ENST00000631321 ZDHHC11BP0C7U3 371 aa12.71□□□□□ -0.38
LINC00540-203ENST00000631321 HGFP14210 728 aa12.71□□□□□ -0.38
LINC00540-203ENST00000631321 TACR2P21452 398 aa12.71□□□□□ -0.38
LINC00540-203ENST00000631321 SLC6A2P23975 617 aa12.71□□□□□ -0.38
LINC00540-203ENST00000631321 HOXD9P28356 352 aaPredicted RBP12.71□□□□□ -0.38
LINC00540-203ENST00000631321 EEF1DP29692 281 aaKnown RBP12.71□□□□□ -0.38
LINC00540-203ENST00000631321 OR1G1P47890 313 aa12.71□□□□□ -0.38
LINC00540-203ENST00000631321 TUBA4AP68366 448 aa12.71□□□□□ -0.38
LINC00540-203ENST00000631321 TAF10Q12962 218 aa12.71□□□□□ -0.38
LINC00540-203ENST00000631321 INPP5AQ14642 412 aa12.71□□□□□ -0.38
LINC00540-203ENST00000631321 PABPC1LQ4VXU2 614 aaKnown RBP12.71□□□□□ -0.38
LINC00540-203ENST00000631321 PAQR3Q6TCH7 311 aa12.71□□□□□ -0.38
LINC00540-203ENST00000631321 AFTPHQ6ULP2 937 aa12.71□□□□□ -0.38
LINC00540-203ENST00000631321 SLC24A5Q71RS6 500 aa12.71□□□□□ -0.38
LINC00540-203ENST00000631321 DDIASQ8IXT1 998 aa12.71□□□□□ -0.38
LINC00540-203ENST00000631321 MYO1HQ8N1T3 1032 aa12.71□□□□□ -0.38
LINC00540-203ENST00000631321 FBXO39Q8N4B4 442 aa12.71□□□□□ -0.38
LINC00540-203ENST00000631321 HIC2Q96JB3 615 aa12.71□□□□□ -0.38
LINC00540-203ENST00000631321 SPATA17Q96L03 361 aa12.71□□□□□ -0.38
LINC00540-203ENST00000631321 KCNA7Q96RP8 456 aa12.71□□□□□ -0.38
LINC00540-203ENST00000631321 TMEM79Q9BSE2 394 aa12.71□□□□□ -0.38
LINC00540-203ENST00000631321 MUC13Q9H3R2 512 aa12.71□□□□□ -0.38
LINC00540-203ENST00000631321 ZFYVE28Q9HCC9 887 aa12.71□□□□□ -0.38
LINC00540-203ENST00000631321 AGPAT4Q9NRZ5 378 aa12.71□□□□□ -0.38
LINC00540-203ENST00000631321 TAS2R13Q9NYV9 303 aa12.71□□□□□ -0.38
LINC00540-203ENST00000631321 MYRFQ9Y2G1 1151 aa12.71□□□□□ -0.38
LINC00540-203ENST00000631321 PCDHA9Q9Y5H5 950 aa12.71□□□□□ -0.38
LINC00540-203ENST00000631321 OAS3Q9Y6K5 1087 aaKnown RBP12.71□□□□□ -0.38
LINC00540-203ENST00000631321 DHRS12A0PJE2 317 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 SOCS2O14508 198 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 STX16O14662 325 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 RHOBTB1O94844 696 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 HMBSP08397 361 aa12.7□□□□□ -0.38
LINC00540-203ENST00000631321 CST5P28325 142 aaPredicted RBP12.7□□□□□ -0.38
LINC00540-203ENST00000631321 KPNA1P52294 538 aaPredicted RBP12.7□□□□□ -0.38
LINC00540-203ENST00000631321 CTXN3Q4LDR2 81 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 105.1 ms