RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 ANKS6Q68DC2 871 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 LYSMD3Q7Z3D4 306 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 TMPRSS9Q7Z410 1059 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 ARHGAP22Q7Z5H3 698 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 NRROSQ86YC3 692 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 RBM12BQ8IXT5 1001 aaKnown RBP6.26□□□□□ -1.41
CUX1-220ENST00000607092 CCDC13Q8IYE1 715 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 NAGSQ8N159 534 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 SFRP1Q8N474 314 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 GALNT11Q8NCW6 608 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 NEK11Q8NG66 645 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 SLC30A5Q8TAD4 765 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 FNIP1Q8TF40 1166 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 PDCD6IPQ8WUM4 868 aaKnown RBP6.26□□□□□ -1.41
CUX1-220ENST00000607092 JPH3Q8WXH2 748 aaPredicted RBP6.26□□□□□ -1.41
CUX1-220ENST00000607092 STARD8Q92502 1023 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 AP2M1Q96CW1 435 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 RTP4Q96DX8 246 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 TRIM11Q96F44 468 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 ABHD17AQ96GS6 310 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 MCEEQ96PE7 176 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 PSMG3-AS1Q96PY0 264 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 MCCC1Q96RQ3 725 aaPredicted RBP6.26□□□□□ -1.41
CUX1-220ENST00000607092 NUDCD1Q96RS6 583 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 LGR4Q9BXB1 951 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 KLC2Q9H0B6 622 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 DHX35Q9H5Z1 703 aaKnown RBP6.26□□□□□ -1.41
CUX1-220ENST00000607092 UCK1Q9HA47 277 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 FAM207AQ9NSI2 230 aaPredicted RBP6.26□□□□□ -1.41
CUX1-220ENST00000607092 CUEDC1Q9NWM3 386 aaPredicted RBP6.26□□□□□ -1.41
CUX1-220ENST00000607092 GOLGA6AQ9NYA3 693 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 CNOT8Q9UFF9 292 aaKnown RBP6.26□□□□□ -1.41
CUX1-220ENST00000607092 AMACRQ9UHK6 382 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 AJAP1Q9UKB5 411 aaPredicted RBP6.26□□□□□ -1.41
CUX1-220ENST00000607092 PPIL1Q9Y3C6 166 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 SCINQ9Y6U3 715 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 BSNQ9UPA5 3926 aa6.26□□□□□ -1.41
CUX1-220ENST00000607092 SETD2Q9BYW2 2564 aaPredicted RBP6.26□□□□□ -1.41
CUX1-220ENST00000607092 SDK2Q58EX2 2172 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 LRP4O75096 1905 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 LILRA5A6NI73 299 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 CYSRT1A8MQ03 144 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 GPR89AB7ZAQ6 455 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 C21orf140B9A014 251 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 H3BRJ5 948 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 CASC3O15234 703 aaKnown RBP6.25□□□□□ -1.41
CUX1-220ENST00000607092 PPM1DO15297 605 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 KLHL41O60662 606 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 AGFG2O95081 481 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 ASMTLO95671 621 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 DDAH2O95865 285 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 GPR89BP0CG08 455 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 PRKAR1AP10644 381 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 FERP16591 822 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 ERCC2P18074 760 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 WT1P19544 449 aaPredicted RBP6.25□□□□□ -1.41
CUX1-220ENST00000607092 PTMSP20962 102 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 PSMA2P25787 234 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 AK4P27144 223 aaPredicted RBP6.25□□□□□ -1.41
CUX1-220ENST00000607092 ETV3P41162 512 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 EPHB1P54762 984 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 JAM2P57087 298 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 RPL26P61254 145 aaKnown RBP6.25□□□□□ -1.41
CUX1-220ENST00000607092 PTP4A2Q12974 167 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 SRSF6Q13247 344 aaKnown RBP6.25□□□□□ -1.41
CUX1-220ENST00000607092 NFKBIBQ15653 356 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 CAMK4Q16566 473 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 DEFB109BQ30KR1 87 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 PYCR3Q53H96 274 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 BOLA3Q53S33 107 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 CHCHD2P9Q5T1J5 151 aaPredicted RBP6.25□□□□□ -1.41
CUX1-220ENST00000607092 FHL5Q5TD97 284 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 MARC1Q5VT66 337 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 DPY19L2P1Q6NXN4 242 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 KLHL35Q6PF15 583 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 TMCO3Q6UWJ1 677 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 C6orf15Q6UXA7 325 aaPredicted RBP6.25□□□□□ -1.41
CUX1-220ENST00000607092 MON1BQ7L1V2 547 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 BPHLQ86WA6 291 aaPredicted RBP6.25□□□□□ -1.41
CUX1-220ENST00000607092 ZSWIM9Q86XI8 627 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 PHYKPLQ8IUZ5 450 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 PYROXD2Q8N2H3 581 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 CBARPQ8N350 705 aaPredicted RBP6.25□□□□□ -1.41
CUX1-220ENST00000607092 ATPAF2Q8N5M1 289 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 BMPERQ8N8U9 685 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 CCL4L1Q8NHW4 92 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 CCHCR1Q8TD31 782 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 SLC20A1Q8WUM9 679 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 NCSTNQ92542 709 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 MIB2Q96AX9 1013 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 CELF6Q96J87 481 aaKnown RBP6.25□□□□□ -1.41
CUX1-220ENST00000607092 FCRL4Q96PJ5 515 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 SLC29A3Q9BZD2 475 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 SPRY4Q9C004 299 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 SLC39A8Q9C0K1 460 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 VPS16Q9H269 839 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 GANQ9H2C0 597 aa6.25□□□□□ -1.41
CUX1-220ENST00000607092 MRPL47Q9HD33 250 aaKnown RBP6.25□□□□□ -1.41
CUX1-220ENST00000607092 ZNF71Q9NQZ8 489 aaPredicted RBP6.25□□□□□ -1.41
CUX1-220ENST00000607092 RAD18Q9NS91 495 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms