RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 ATP5DP30049 168 aa14.59□□□□□ -0.07
VRK3-212ENST00000596814 RPS9P46781 194 aaKnown RBP14.59□□□□□ -0.07
VRK3-212ENST00000596814 ADPRHP54922 357 aa14.59□□□□□ -0.07
VRK3-212ENST00000596814 NFATC2Q13469 925 aa14.59□□□□□ -0.07
VRK3-212ENST00000596814 CHRNA6Q15825 494 aa14.59□□□□□ -0.07
VRK3-212ENST00000596814 TYSND1Q2T9J0 566 aa14.59□□□□□ -0.07
VRK3-212ENST00000596814 LGSNQ5TDP6 509 aa14.59□□□□□ -0.07
VRK3-212ENST00000596814 AGBL2Q5U5Z8 902 aa14.59□□□□□ -0.07
VRK3-212ENST00000596814 PSAPL1Q6NUJ1 521 aa14.59□□□□□ -0.07
VRK3-212ENST00000596814 SNX20Q7Z614 316 aa14.59□□□□□ -0.07
VRK3-212ENST00000596814 TECPR1Q7Z6L1 1165 aa14.59□□□□□ -0.07
VRK3-212ENST00000596814 GALNT7Q86SF2 657 aa14.59□□□□□ -0.07
VRK3-212ENST00000596814 LDB1Q86U70 411 aaPredicted RBP14.59□□□□□ -0.07
VRK3-212ENST00000596814 NRSN1Q8IZ57 195 aa14.59□□□□□ -0.07
VRK3-212ENST00000596814 PGBD3Q8N328 593 aa14.59□□□□□ -0.07
VRK3-212ENST00000596814 OR14C36Q8NHC7 312 aa14.59□□□□□ -0.07
VRK3-212ENST00000596814 SCG3Q8WXD2 468 aaKnown RBP14.59□□□□□ -0.07
VRK3-212ENST00000596814 DTD2Q96FN9 168 aa14.59□□□□□ -0.07
VRK3-212ENST00000596814 HHIPQ96QV1 700 aa14.59□□□□□ -0.07
VRK3-212ENST00000596814 FAM83DQ9H4H8 585 aa14.59□□□□□ -0.07
VRK3-212ENST00000596814 FAM96AQ9H5X1 160 aa14.59□□□□□ -0.07
VRK3-212ENST00000596814 ASB8Q9H765 288 aa14.59□□□□□ -0.07
VRK3-212ENST00000596814 FBXO6Q9NRD1 293 aaPredicted RBP14.59□□□□□ -0.07
VRK3-212ENST00000596814 C2orf42Q9NWW7 574 aa14.59□□□□□ -0.07
VRK3-212ENST00000596814 COQ6Q9Y2Z9 468 aa14.59□□□□□ -0.07
VRK3-212ENST00000596814 SIT1Q9Y3P8 196 aa14.59□□□□□ -0.07
VRK3-212ENST00000596814 TRPM6Q9BX84 2022 aa14.59□□□□□ -0.07
VRK3-212ENST00000596814 GPR39O43194 453 aa14.58□□□□□ -0.07
VRK3-212ENST00000596814 KRT15P19012 456 aa14.58□□□□□ -0.07
VRK3-212ENST00000596814 SPRP35270 261 aaPredicted RBP14.58□□□□□ -0.07
VRK3-212ENST00000596814 LEPRP48357 1165 aaKnown RBP14.58□□□□□ -0.07
VRK3-212ENST00000596814 CD151P48509 253 aa14.58□□□□□ -0.07
VRK3-212ENST00000596814 CDKN1CP49918 316 aaPredicted RBP14.58□□□□□ -0.07
VRK3-212ENST00000596814 LIMK2P53671 638 aa14.58□□□□□ -0.07
VRK3-212ENST00000596814 ITGA9Q13797 1035 aa14.58□□□□□ -0.07
VRK3-212ENST00000596814 BMPR2Q13873 1038 aa14.58□□□□□ -0.07
VRK3-212ENST00000596814 ZNF284Q2VY69 593 aa14.58□□□□□ -0.07
VRK3-212ENST00000596814 TTMPQ5BVD1 217 aa14.58□□□□□ -0.07
VRK3-212ENST00000596814 ANO7Q6IWH7 933 aa14.58□□□□□ -0.07
VRK3-212ENST00000596814 CYP2U1Q7Z449 544 aa14.58□□□□□ -0.07
VRK3-212ENST00000596814 PIANPQ8IYJ0 282 aa14.58□□□□□ -0.07
VRK3-212ENST00000596814 CYP4X1Q8N118 509 aa14.58□□□□□ -0.07
VRK3-212ENST00000596814 CNPY4Q8N129 248 aa14.58□□□□□ -0.07
VRK3-212ENST00000596814 SPEM1Q8N4L4 309 aa14.58□□□□□ -0.07
VRK3-212ENST00000596814 NUS1Q96E22 293 aa14.58□□□□□ -0.07
VRK3-212ENST00000596814 ATXN7L3BQ96GX2 97 aa14.58□□□□□ -0.07
VRK3-212ENST00000596814 ATP6V1G3Q96LB4 118 aa14.58□□□□□ -0.07
VRK3-212ENST00000596814 SPATA16Q9BXB7 569 aa14.58□□□□□ -0.07
VRK3-212ENST00000596814 RHOJQ9H4E5 214 aa14.58□□□□□ -0.07
VRK3-212ENST00000596814 CD93Q9NPY3 652 aa14.58□□□□□ -0.07
VRK3-212ENST00000596814 INTS10Q9NVR2 710 aaKnown RBP14.58□□□□□ -0.07
VRK3-212ENST00000596814 PLXNB3Q9ULL4 1909 aa14.58□□□□□ -0.08
VRK3-212ENST00000596814 NUMA1Q14980 2115 aa14.58□□□□□ -0.08
VRK3-212ENST00000596814 PFDN6O15212 129 aa14.58□□□□□ -0.08
VRK3-212ENST00000596814 RECQL5O94762 991 aaPredicted RBP14.58□□□□□ -0.08
VRK3-212ENST00000596814 AHSGP02765 367 aa14.58□□□□□ -0.08
VRK3-212ENST00000596814 ITGA2BP08514 1039 aa14.58□□□□□ -0.08
VRK3-212ENST00000596814 SNRPAP09012 282 aaKnown RBP14.58□□□□□ -0.08
VRK3-212ENST00000596814 GABRB3P28472 473 aa14.58□□□□□ -0.08
VRK3-212ENST00000596814 ABCG1P45844 678 aa14.58□□□□□ -0.08
VRK3-212ENST00000596814 TTPAP49638 278 aa14.58□□□□□ -0.08
VRK3-212ENST00000596814 TPMTP51580 245 aa14.58□□□□□ -0.08
VRK3-212ENST00000596814 CREB5Q02930 508 aa14.58□□□□□ -0.08
VRK3-212ENST00000596814 GPR33Q49SQ1 333 aa14.58□□□□□ -0.08
VRK3-212ENST00000596814 HENMT1Q5T8I9 393 aaKnown RBP14.58□□□□□ -0.08
VRK3-212ENST00000596814 RNF187Q5TA31 235 aaPredicted RBP14.58□□□□□ -0.08
VRK3-212ENST00000596814 TAS2R42Q7RTR8 314 aa14.58□□□□□ -0.08
VRK3-212ENST00000596814 FAM124AQ86V42 546 aa14.58□□□□□ -0.08
VRK3-212ENST00000596814 ZC3HC1Q86WB0 502 aaKnown RBP14.58□□□□□ -0.08
VRK3-212ENST00000596814 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.58□□□□□ -0.08
VRK3-212ENST00000596814 PNPLA1Q8N8W4 532 aa14.58□□□□□ -0.08
VRK3-212ENST00000596814 ZNF398Q8TD17 642 aa14.58□□□□□ -0.08
VRK3-212ENST00000596814 DTX3LQ8TDB6 740 aa14.58□□□□□ -0.08
VRK3-212ENST00000596814 EDAQ92838 391 aa14.58□□□□□ -0.08
VRK3-212ENST00000596814 SCAMP4Q969E2 229 aa14.58□□□□□ -0.08
VRK3-212ENST00000596814 MTBPQ96DY7 904 aa14.58□□□□□ -0.08
VRK3-212ENST00000596814 VPS39Q96JC1 886 aa14.58□□□□□ -0.08
VRK3-212ENST00000596814 UHRF1Q96T88 793 aaPredicted RBP14.58□□□□□ -0.08
VRK3-212ENST00000596814 TCF12Q99081 682 aa14.58□□□□□ -0.08
VRK3-212ENST00000596814 MCMBPQ9BTE3 642 aa14.58□□□□□ -0.08
VRK3-212ENST00000596814 IER2Q9BTL4 223 aa14.58□□□□□ -0.08
VRK3-212ENST00000596814 ZSCAN5AQ9BUG6 496 aa14.58□□□□□ -0.08
VRK3-212ENST00000596814 ABCG8Q9H221 673 aa14.58□□□□□ -0.08
VRK3-212ENST00000596814 PREBQ9HCU5 417 aa14.58□□□□□ -0.08
VRK3-212ENST00000596814 USP36Q9P275 1121 aaKnown RBP14.58□□□□□ -0.08
VRK3-212ENST00000596814 CRLS1Q9UJA2 301 aa14.58□□□□□ -0.08
VRK3-212ENST00000596814 VPS9D1Q9Y2B5 631 aa14.58□□□□□ -0.08
VRK3-212ENST00000596814 TRBV5-4A0A0C4DH59 114 aa14.57□□□□□ -0.08
VRK3-212ENST00000596814 PRR23AA6NEV1 266 aa14.57□□□□□ -0.08
VRK3-212ENST00000596814 HMGB1P1B2RPK0 211 aaPredicted RBP14.57□□□□□ -0.08
VRK3-212ENST00000596814 TRIM49D1C9J1S8 452 aa14.57□□□□□ -0.08
VRK3-212ENST00000596814 H3BQF6 201 aa14.57□□□□□ -0.08
VRK3-212ENST00000596814 DCXO43602 365 aa14.57□□□□□ -0.08
VRK3-212ENST00000596814 NDUFS3O75489 264 aa14.57□□□□□ -0.08
VRK3-212ENST00000596814 TM7SF2O76062 418 aa14.57□□□□□ -0.08
VRK3-212ENST00000596814 S1PR4O95977 384 aa14.57□□□□□ -0.08
VRK3-212ENST00000596814 DCNP07585 359 aaKnown RBP14.57□□□□□ -0.08
VRK3-212ENST00000596814 PPARGP37231 505 aaPredicted RBP14.57□□□□□ -0.08
VRK3-212ENST00000596814 ZNF789Q5FWF6 425 aa14.57□□□□□ -0.08
VRK3-212ENST00000596814 TNFAIP8L3Q5GJ75 292 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms