RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 ZNF578Q96N58 590 aaPredicted RBP12.98□□□□□ -0.33
LIG1-212ENST00000596549 AGAP3Q96P47 875 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 OR2M4Q96R27 311 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 GFM1Q96RP9 751 aaKnown RBP12.98□□□□□ -0.33
LIG1-212ENST00000596549 GSDMCQ9BYG8 508 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 FOXP3Q9BZS1 431 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 LRRN3Q9H3W5 708 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 SEPT10Q9P0V9 454 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 TAAR2Q9P1P5 351 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 ATXN7L1Q9ULK2 861 aaPredicted RBP12.98□□□□□ -0.33
LIG1-212ENST00000596549 CNOT6Q9ULM6 557 aaKnown RBP12.98□□□□□ -0.33
LIG1-212ENST00000596549 TMEM98Q9Y2Y6 226 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 REXO2Q9Y3B8 237 aaKnown RBP12.98□□□□□ -0.33
LIG1-212ENST00000596549 PCDHA13Q9Y5I0 950 aa12.98□□□□□ -0.33
LIG1-212ENST00000596549 UNC13CQ8NB66 2214 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 CCDC187A0A096LP49 1063 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 A0A0A6YYK5 440 aaPredicted RBP12.97□□□□□ -0.33
LIG1-212ENST00000596549 NUDT21O43809 227 aaKnown RBP12.97□□□□□ -0.33
LIG1-212ENST00000596549 CST8O60676 142 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 DNAJC6O75061 913 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 ATP1A1P05023 1023 aaKnown RBP12.97□□□□□ -0.33
LIG1-212ENST00000596549 FGF1P05230 155 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 PIRTP0C851 137 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 PNLIPP16233 465 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 ZFXP17010 805 aaPredicted RBP12.97□□□□□ -0.33
LIG1-212ENST00000596549 CCKBRP32239 447 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 CD68P34810 354 aaPredicted RBP12.97□□□□□ -0.33
LIG1-212ENST00000596549 ERVPABLB-1P60509 514 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 WASHC5Q12768 1159 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 NR1D2Q14995 579 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 SLC14A2Q15849 920 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 PCSK7Q16549 785 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 PYCR3Q53H96 274 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 KAZNQ674X7 775 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 LRRC69Q6ZNQ3 347 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 MARK2Q7KZI7 788 aaKnown RBP12.97□□□□□ -0.33
LIG1-212ENST00000596549 NT5DC3Q86UY8 548 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 NLRP8Q86W28 1048 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 RAVER1Q8IY67 606 aaKnown RBP12.97□□□□□ -0.33
LIG1-212ENST00000596549 CCDC170Q8IYT3 715 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 KATNAL2Q8IYT4 538 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 LSMEM2Q8N112 164 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 Q8N9G6 341 aaPredicted RBP12.97□□□□□ -0.33
LIG1-212ENST00000596549 ZNF248Q8NDW4 579 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 KIAA1524Q8TCG1 905 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 ZDHHC1Q8WTX9 485 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 HAUS1Q96CS2 278 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 NAF1Q96HR8 494 aaKnown RBP12.97□□□□□ -0.33
LIG1-212ENST00000596549 MRFAP1L1Q96HT8 127 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 SLC46A1Q96NT5 459 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 HERPUD2Q9BSE4 406 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 MLPHQ9BV36 600 aaPredicted RBP12.97□□□□□ -0.33
LIG1-212ENST00000596549 MAK16Q9BXY0 300 aaKnown RBP12.97□□□□□ -0.33
LIG1-212ENST00000596549 CDH19Q9H159 772 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 SLC25A51Q9H1U9 297 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 PRORYQ9H606 182 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 EPB41L5Q9HCM4 733 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 LRIT1Q9P2V4 623 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 ZNF711Q9Y462 761 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 IGSF10Q6WRI0 2623 aa12.97□□□□□ -0.33
LIG1-212ENST00000596549 PTPRQQ9UMZ3 2332 aa12.96□□□□□ -0.33
LIG1-212ENST00000596549 RRP8O43159 456 aaKnown RBP12.96□□□□□ -0.33
LIG1-212ENST00000596549 ECEL1O95672 775 aa12.96□□□□□ -0.33
LIG1-212ENST00000596549 EML2O95834 649 aa12.96□□□□□ -0.33
LIG1-212ENST00000596549 PYGLP06737 847 aa12.96□□□□□ -0.33
LIG1-212ENST00000596549 HGFP14210 728 aa12.96□□□□□ -0.33
LIG1-212ENST00000596549 NFKB1P19838 968 aa12.96□□□□□ -0.33
LIG1-212ENST00000596549 CYLC1P35663 651 aaPredicted RBP12.96□□□□□ -0.33
LIG1-212ENST00000596549 ACTR1BP42025 376 aa12.96□□□□□ -0.33
LIG1-212ENST00000596549 INHBCP55103 352 aa12.96□□□□□ -0.33
LIG1-212ENST00000596549 ACTR1AP61163 376 aa12.96□□□□□ -0.33
LIG1-212ENST00000596549 B4GALNT1Q00973 533 aa12.96□□□□□ -0.33
LIG1-212ENST00000596549 NOMO1Q15155 1222 aa12.96□□□□□ -0.33
LIG1-212ENST00000596549 SOWAHCQ53LP3 525 aaPredicted RBP12.96□□□□□ -0.33
LIG1-212ENST00000596549 TEX44Q53QW1 395 aa12.96□□□□□ -0.33
LIG1-212ENST00000596549 ODF2Q5BJF6 829 aa12.96□□□□□ -0.33
LIG1-212ENST00000596549 TFDP3Q5H9I0 405 aa12.96□□□□□ -0.33
LIG1-212ENST00000596549 FOXR1Q6PIV2 292 aa12.96□□□□□ -0.33
LIG1-212ENST00000596549 RAD9BQ6WBX8 426 aa12.96□□□□□ -0.33
LIG1-212ENST00000596549 KDELC2Q7Z4H8 507 aa12.96□□□□□ -0.33
LIG1-212ENST00000596549 CLEC14AQ86T13 490 aa12.96□□□□□ -0.33
LIG1-212ENST00000596549 GAS2L3Q86XJ1 694 aa12.96□□□□□ -0.33
LIG1-212ENST00000596549 SLITRK4Q8IW52 837 aa12.96□□□□□ -0.33
LIG1-212ENST00000596549 EXD1Q8NHP7 514 aa12.96□□□□□ -0.33
LIG1-212ENST00000596549 WDR36Q8NI36 951 aaKnown RBP12.96□□□□□ -0.33
LIG1-212ENST00000596549 GLOD4Q9HC38 313 aa12.96□□□□□ -0.33
LIG1-212ENST00000596549 THSD1Q9NS62 852 aa12.96□□□□□ -0.33
LIG1-212ENST00000596549 PKD2L2Q9NZM6 624 aa12.96□□□□□ -0.33
LIG1-212ENST00000596549 VPS18Q9P253 973 aa12.96□□□□□ -0.33
LIG1-212ENST00000596549 NFKBIL1Q9UBC1 381 aaPredicted RBP12.96□□□□□ -0.33
LIG1-212ENST00000596549 SHOC2Q9UQ13 582 aa12.96□□□□□ -0.33
LIG1-212ENST00000596549 NDUFA10O95299 355 aa12.95□□□□□ -0.34
LIG1-212ENST00000596549 SLC4A1P02730 911 aa12.95□□□□□ -0.34
LIG1-212ENST00000596549 CSF2RBP32927 897 aa12.95□□□□□ -0.34
LIG1-212ENST00000596549 NR2C2P49116 596 aa12.95□□□□□ -0.34
LIG1-212ENST00000596549 DCDC1P59894 354 aa12.95□□□□□ -0.34
LIG1-212ENST00000596549 CDK18Q07002 472 aa12.95□□□□□ -0.34
LIG1-212ENST00000596549 ZFP36L1Q07352 338 aaKnown RBP12.95□□□□□ -0.34
LIG1-212ENST00000596549 TFDP2Q14188 446 aa12.95□□□□□ -0.34
LIG1-212ENST00000596549 ALS2CLQ60I27 953 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms