RNA–Protein interactions for RNA: ENST00000594973.5

SHKBP1-205, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,339 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-205ENST00000594973 PRAMEP78395 509 aa17.04■□□□□ 0.32
SHKBP1-205ENST00000594973 TXNL4AP83876 142 aaKnown RBP17.04■□□□□ 0.32
SHKBP1-205ENST00000594973 CLPPQ16740 277 aaPredicted RBP17.04■□□□□ 0.32
SHKBP1-205ENST00000594973 C6orf52Q5T4I8 152 aa17.04■□□□□ 0.32
SHKBP1-205ENST00000594973 DNAJB7Q7Z6W7 309 aaPredicted RBP17.04■□□□□ 0.32
SHKBP1-205ENST00000594973 FSTL5Q8N475 847 aaPredicted RBP17.04■□□□□ 0.32
SHKBP1-205ENST00000594973 ZNF689Q96CS4 500 aaPredicted RBP17.04■□□□□ 0.32
SHKBP1-205ENST00000594973 SERPINI1Q99574 410 aa17.04■□□□□ 0.32
SHKBP1-205ENST00000594973 NEURL2Q9BR09 285 aa17.04■□□□□ 0.32
SHKBP1-205ENST00000594973 DNAJC28Q9NX36 388 aa17.04■□□□□ 0.32
SHKBP1-205ENST00000594973 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 TRIM13O60858 407 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 CLASP2O75122 1294 aaKnown RBP17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 CLDN11O75508 207 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 H6PDO95479 791 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 RHOCP08134 193 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 SERPINF2P08697 491 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 ACRP10323 421 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 SLC12A2P55011 1212 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 ZNF177Q13360 481 aaPredicted RBP17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 VWA5B1Q5TIE3 1220 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 NIPAL1Q6NVV3 410 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 ISLR2Q6UXK2 745 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 MAVSQ7Z434 540 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 CHERPQ8IWX8 916 aaKnown RBP17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 DDHD1Q8NEL9 900 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 NXNL1Q96CM4 212 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 SLC22A12Q96S37 553 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 OMDQ99983 421 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 RTKNQ9BST9 563 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 CINPQ9BW66 212 aaPredicted RBP17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 CRISPLD2Q9H0B8 497 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 PALMDQ9NP74 551 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 UBA2Q9UBT2 640 aaPredicted RBP17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 COL4A6Q14031 1691 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 MYOCOSA0A1B0GUC4 107 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 MROH6A6NGR9 719 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 LDB2O43679 373 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 SBK3P0C264 359 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 MBL2P11226 248 aaPredicted RBP17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 RGRP47804 291 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 CDKL1Q00532 357 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 KCNC4Q03721 635 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 ADGRF1Q5T601 910 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 TMEM151AQ8N4L1 468 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 ZNF781Q8N8C0 355 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 HM13Q8TCT9 377 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 SREK1Q8WXA9 508 aaKnown RBP17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 BHMTQ93088 406 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 CGREF1Q99674 301 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 MUC3BQ9H195 1237 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 OXSMQ9NWU1 459 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 SPG21Q9NZD8 308 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 XPR1Q9UBH6 696 aa17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 GPC6Q9Y625 555 aaPredicted RBP17.03■□□□□ 0.32
SHKBP1-205ENST00000594973 TPD52L2O43399 206 aaKnown RBP17.02■□□□□ 0.32
SHKBP1-205ENST00000594973 BMP10O95393 424 aa17.02■□□□□ 0.32
SHKBP1-205ENST00000594973 GSTT2P0CG29 244 aa17.02■□□□□ 0.32
SHKBP1-205ENST00000594973 GSTT2BP0CG30 244 aa17.02■□□□□ 0.32
SHKBP1-205ENST00000594973 CALML6Q8TD86 181 aa17.02■□□□□ 0.32
SHKBP1-205ENST00000594973 DLG3Q92796 817 aa17.02■□□□□ 0.32
SHKBP1-205ENST00000594973 TBATAQ96M53 351 aa17.02■□□□□ 0.32
SHKBP1-205ENST00000594973 ZNF599Q96NL3 588 aa17.02■□□□□ 0.32
SHKBP1-205ENST00000594973 GATA5Q9BWX5 397 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-205ENST00000594973 KLF16Q9BXK1 252 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-205ENST00000594973 LIN28AQ9H9Z2 209 aaKnown RBP17.02■□□□□ 0.32
SHKBP1-205ENST00000594973 SCHIP1Q9P0W5 487 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-205ENST00000594973 MARCH4Q9P2E8 410 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-205ENST00000594973 SEPT3Q9UH03 358 aa17.02■□□□□ 0.32
SHKBP1-205ENST00000594973 CROTQ9UKG9 612 aa17.02■□□□□ 0.32
SHKBP1-205ENST00000594973 ABHD14A-ACY1A0A1B0GW23 586 aa17.02■□□□□ 0.31
SHKBP1-205ENST00000594973 PAPSS2O95340 614 aaPredicted RBP17.02■□□□□ 0.31
SHKBP1-205ENST00000594973 S100A1P23297 94 aa17.02■□□□□ 0.31
SHKBP1-205ENST00000594973 CCR10P46092 362 aa17.02■□□□□ 0.31
SHKBP1-205ENST00000594973 SMAD3P84022 425 aaKnown RBP17.02■□□□□ 0.31
SHKBP1-205ENST00000594973 RNF219Q5W0B1 726 aaPredicted RBP17.02■□□□□ 0.31
SHKBP1-205ENST00000594973 THOC7Q6I9Y2 204 aaKnown RBP17.02■□□□□ 0.31
SHKBP1-205ENST00000594973 LRRC8EQ6NSJ5 796 aa17.02■□□□□ 0.31
SHKBP1-205ENST00000594973 TMEM150AQ86TG1 271 aa17.02■□□□□ 0.31
SHKBP1-205ENST00000594973 CILP2Q8IUL8 1156 aa17.02■□□□□ 0.31
SHKBP1-205ENST00000594973 CHPT1Q8WUD6 406 aa17.02■□□□□ 0.31
SHKBP1-205ENST00000594973 TMIGD2Q96BF3 282 aa17.02■□□□□ 0.31
SHKBP1-205ENST00000594973 TRMT2BQ96GJ1 504 aaKnown RBP17.02■□□□□ 0.31
SHKBP1-205ENST00000594973 FEM1CQ96JP0 617 aa17.02■□□□□ 0.31
SHKBP1-205ENST00000594973 OLFM1Q99784 485 aa17.02■□□□□ 0.31
SHKBP1-205ENST00000594973 VPS28Q9UK41 221 aa17.02■□□□□ 0.31
SHKBP1-205ENST00000594973 PCDHB12Q9Y5F1 795 aa17.02■□□□□ 0.31
SHKBP1-205ENST00000594973 HEMK1Q9Y5R4 338 aaPredicted RBP17.02■□□□□ 0.31
SHKBP1-205ENST00000594973 A0A1B0GVM2 712 aa17.01■□□□□ 0.31
SHKBP1-205ENST00000594973 TCAF2A6NFQ2 919 aa17.01■□□□□ 0.31
SHKBP1-205ENST00000594973 H3BNH8 94 aa17.01■□□□□ 0.31
SHKBP1-205ENST00000594973 KDELR3O43731 214 aa17.01■□□□□ 0.31
SHKBP1-205ENST00000594973 CSPG5O95196 566 aa17.01■□□□□ 0.31
SHKBP1-205ENST00000594973 ESRRBO95718 433 aa17.01■□□□□ 0.31
SHKBP1-205ENST00000594973 APOA4P06727 396 aa17.01■□□□□ 0.31
SHKBP1-205ENST00000594973 CHRNGP07510 517 aa17.01■□□□□ 0.31
SHKBP1-205ENST00000594973 GRIA4P48058 902 aa17.01■□□□□ 0.31
SHKBP1-205ENST00000594973 WDR5P61964 334 aaKnown RBP17.01■□□□□ 0.31
SHKBP1-205ENST00000594973 RAB33AQ14088 237 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms