RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 SERPINA4P29622 427 aa11.22□□□□□ -0.61
LIG3-204ENST00000585740 FMO4P31512 558 aa11.22□□□□□ -0.61
LIG3-204ENST00000585740 HMGCLP35914 325 aa11.22□□□□□ -0.61
LIG3-204ENST00000585740 PGGT1BP53609 377 aa11.22□□□□□ -0.61
LIG3-204ENST00000585740 ERVFC1P60507 584 aa11.22□□□□□ -0.61
LIG3-204ENST00000585740 KDSRQ06136 332 aa11.22□□□□□ -0.61
LIG3-204ENST00000585740 UBAP2LQ14157 1087 aaKnown RBP11.22□□□□□ -0.61
LIG3-204ENST00000585740 NAA25Q14CX7 972 aa11.22□□□□□ -0.61
LIG3-204ENST00000585740 HERC3Q15034 1050 aa11.22□□□□□ -0.61
LIG3-204ENST00000585740 PTPRNQ16849 979 aa11.22□□□□□ -0.61
LIG3-204ENST00000585740 ZRANB3Q5FWF4 1079 aa11.22□□□□□ -0.61
LIG3-204ENST00000585740 PITRM1Q5JRX3 1037 aa11.22□□□□□ -0.61
LIG3-204ENST00000585740 ATXN7L2Q5T6C5 722 aaPredicted RBP11.22□□□□□ -0.61
LIG3-204ENST00000585740 PDE12Q6L8Q7 609 aaKnown RBP11.22□□□□□ -0.61
LIG3-204ENST00000585740 TMEM207Q6UWW9 146 aa11.22□□□□□ -0.61
LIG3-204ENST00000585740 FRMD7Q6ZUT3 714 aa11.22□□□□□ -0.61
LIG3-204ENST00000585740 CMTM8Q8IZV2 173 aa11.22□□□□□ -0.61
LIG3-204ENST00000585740 SPATA6LQ8N4H0 392 aa11.22□□□□□ -0.61
LIG3-204ENST00000585740 CPSF7Q8N684 471 aaKnown RBP11.22□□□□□ -0.61
LIG3-204ENST00000585740 PAF1Q8N7H5 531 aa11.22□□□□□ -0.61
LIG3-204ENST00000585740 KIAA1958Q8N8K9 716 aa11.22□□□□□ -0.61
LIG3-204ENST00000585740 STAG3L4Q8TBR4 150 aa11.22□□□□□ -0.61
LIG3-204ENST00000585740 SPPL3Q8TCT6 385 aa11.22□□□□□ -0.61
LIG3-204ENST00000585740 ACTRT2Q8TDY3 377 aa11.22□□□□□ -0.61
LIG3-204ENST00000585740 SLC22A17Q8WUG5 538 aa11.22□□□□□ -0.61
LIG3-204ENST00000585740 POF1BQ8WVV4 589 aa11.22□□□□□ -0.61
LIG3-204ENST00000585740 PIH1D2Q8WWB5 315 aa11.22□□□□□ -0.61
LIG3-204ENST00000585740 OTUB2Q96DC9 234 aa11.22□□□□□ -0.61
LIG3-204ENST00000585740 ALG9Q9H6U8 611 aa11.22□□□□□ -0.61
LIG3-204ENST00000585740 GTSE1Q9NYZ3 720 aa11.22□□□□□ -0.61
LIG3-204ENST00000585740 TRMT6Q9UJA5 497 aaKnown RBP11.22□□□□□ -0.61
LIG3-204ENST00000585740 SLC25A13Q9UJS0 675 aa11.22□□□□□ -0.61
LIG3-204ENST00000585740 APPL1Q9UKG1 709 aa11.22□□□□□ -0.61
LIG3-204ENST00000585740 OAS3Q9Y6K5 1087 aaKnown RBP11.22□□□□□ -0.61
LIG3-204ENST00000585740 A0A0J9YYE9 177 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 A8MUI8 341 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 H3BMM5 538 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 ZNF197O14709 1029 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 SLC9A3R1O14745 358 aaPredicted RBP11.21□□□□□ -0.61
LIG3-204ENST00000585740 KERAO60938 352 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 TM7SF2O76062 418 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 TRBC1P01850 177 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 THRAP10827 490 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 ITGALP20701 1170 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 RPS3P23396 243 aaKnown RBP eCLIP11.21□□□□□ -0.61
LIG3-204ENST00000585740 SP100P23497 879 aaPredicted RBP11.21□□□□□ -0.61
LIG3-204ENST00000585740 HERVK_113P63132 956 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 TIAL1Q01085 375 aaKnown RBP eCLIP11.21□□□□□ -0.61
LIG3-204ENST00000585740 KLF10Q13118 480 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 PEX6Q13608 980 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 ZNF678Q5SXM1 525 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 VWA5B1Q5TIE3 1220 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 TXNDC11Q6PKC3 985 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 TPGS1Q6ZTW0 290 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 NET1Q7Z628 596 aaPredicted RBP11.21□□□□□ -0.61
LIG3-204ENST00000585740 CUZD1Q86UP6 607 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 PIM3Q86V86 326 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 SCUBE1Q8IWY4 988 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 CBARPQ8N350 705 aaPredicted RBP11.21□□□□□ -0.61
LIG3-204ENST00000585740 PCDH20Q8N6Y1 951 aaKnown RBP11.21□□□□□ -0.61
LIG3-204ENST00000585740 RBM15BQ8NDT2 890 aaKnown RBP11.21□□□□□ -0.61
LIG3-204ENST00000585740 OR2AP1Q8NGE2 309 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 CEP70Q8NHQ1 597 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 MAPK15Q8TD08 544 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 AGAP11Q8TF27 550 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 KCNJ9Q92806 393 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 MAELQ96JY0 434 aaKnown RBP11.21□□□□□ -0.61
LIG3-204ENST00000585740 LMLNQ96KR4 655 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 LYSMD1Q96S90 227 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 RTKNQ9BST9 563 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 ERVK-6Q9BXR3 956 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 DCLRE1BQ9H816 532 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 RNPEPL1Q9HAU8 725 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 MAN1C1Q9NR34 630 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 NDE1Q9NXR1 346 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 NOP53Q9NZM5 478 aaKnown RBP11.21□□□□□ -0.61
LIG3-204ENST00000585740 EVLQ9UI08 416 aaPredicted RBP11.21□□□□□ -0.61
LIG3-204ENST00000585740 HS3ST2Q9Y278 367 aa11.21□□□□□ -0.61
LIG3-204ENST00000585740 NEMP2A6NFY4 417 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 CAPN8A6NHC0 703 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 E9PBE3 544 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 C5orf67F2Z3F1 127 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 STX16-NPEPL1H3BU86 382 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 STX16O14662 325 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 PRMT5O14744 637 aaPredicted RBP11.2□□□□□ -0.62
LIG3-204ENST00000585740 SCAMP3O14828 347 aaKnown RBP11.2□□□□□ -0.62
LIG3-204ENST00000585740 ZBTB14O43829 449 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 KLHL41O60662 606 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 MT-CO1P00395 513 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 COX4I1P13073 169 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 ZNF7P17097 686 aaPredicted RBP11.2□□□□□ -0.62
LIG3-204ENST00000585740 GJA1P17302 382 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 NFKBIAP25963 317 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 CD70P32970 193 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 CPA2P48052 419 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 INHBCP55103 352 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 IRX1P78414 480 aaPredicted RBP11.2□□□□□ -0.62
LIG3-204ENST00000585740 XIAPP98170 497 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 TEAD2Q15562 447 aa11.2□□□□□ -0.62
LIG3-204ENST00000585740 TRMT5Q32P41 509 aaKnown RBP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms