RNA–Protein interactions for RNA: ENST00000574501.1

SMG6-215, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

Gene SMG6, Length 2,419 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-215ENST00000574501 HS3ST5Q8IZT8 346 aa14.37□□□□□ -0.11
SMG6-215ENST00000574501 PAPD5Q8NDF8 572 aaKnown RBP14.37□□□□□ -0.11
SMG6-215ENST00000574501 TRIB2Q92519 343 aa14.37□□□□□ -0.11
SMG6-215ENST00000574501 HDAC2Q92769 488 aaKnown RBP14.37□□□□□ -0.11
SMG6-215ENST00000574501 UPF1Q92900 1129 aaKnown RBP eCLIP14.37□□□□□ -0.112e-7■■■■□ 25.9
SMG6-215ENST00000574501 CLIP3Q96DZ5 547 aa14.37□□□□□ -0.11
SMG6-215ENST00000574501 KCNA7Q96RP8 456 aa14.37□□□□□ -0.11
SMG6-215ENST00000574501 TRIT1Q9H3H1 467 aaKnown RBP14.37□□□□□ -0.11
SMG6-215ENST00000574501 RNF19AQ9NV58 838 aa14.37□□□□□ -0.11
SMG6-215ENST00000574501 PAK1IP1Q9NWT1 392 aaPredicted RBP14.37□□□□□ -0.11
SMG6-215ENST00000574501 THG1LQ9NWX6 298 aaKnown RBP14.37□□□□□ -0.11
SMG6-215ENST00000574501 TNFSF13BQ9Y275 285 aa14.37□□□□□ -0.11
SMG6-215ENST00000574501 SHROOM3Q8TF72 1996 aa14.37□□□□□ -0.11
SMG6-215ENST00000574501 A0A087WZ62 844 aa14.37□□□□□ -0.11
SMG6-215ENST00000574501 ZBTB42B2RXF5 422 aa14.37□□□□□ -0.11
SMG6-215ENST00000574501 M0QYT0 321 aa14.37□□□□□ -0.11
SMG6-215ENST00000574501 UPK1AO00322 258 aa14.37□□□□□ -0.11
SMG6-215ENST00000574501 PIP5K1BO14986 540 aa14.37□□□□□ -0.11
SMG6-215ENST00000574501 SNPHO15079 494 aa14.37□□□□□ -0.11
SMG6-215ENST00000574501 MT-CYBP00156 380 aaPredicted RBP14.37□□□□□ -0.11
SMG6-215ENST00000574501 HRH2P25021 359 aa14.37□□□□□ -0.11
SMG6-215ENST00000574501 SNX16P57768 344 aa14.37□□□□□ -0.11
SMG6-215ENST00000574501 SH3BP2P78314 561 aa14.37□□□□□ -0.11
SMG6-215ENST00000574501 SLC25A52Q3SY17 297 aa14.37□□□□□ -0.11
SMG6-215ENST00000574501 PAGE3Q5JUK9 113 aa14.37□□□□□ -0.11
SMG6-215ENST00000574501 OTUD1Q5VV17 481 aaPredicted RBP14.37□□□□□ -0.11
SMG6-215ENST00000574501 FAM160B1Q5W0V3 765 aa14.37□□□□□ -0.11
SMG6-215ENST00000574501 PKN3Q6P5Z2 889 aa14.37□□□□□ -0.11
SMG6-215ENST00000574501 C14orf80Q86SX3 495 aa14.37□□□□□ -0.11
SMG6-215ENST00000574501 LEMD2Q8NC56 503 aa14.37□□□□□ -0.11
SMG6-215ENST00000574501 OR6Q1Q8NGQ2 317 aa14.37□□□□□ -0.11
SMG6-215ENST00000574501 LILRB4Q8NHJ6 448 aa14.37□□□□□ -0.11
SMG6-215ENST00000574501 ANKRD49Q8WVL7 239 aa14.37□□□□□ -0.11
SMG6-215ENST00000574501 TEX37Q96LM6 180 aa14.37□□□□□ -0.11
SMG6-215ENST00000574501 MIR1-1HGQ9H1L0 117 aa14.37□□□□□ -0.11
SMG6-215ENST00000574501 ALG9Q9H6U8 611 aa14.37□□□□□ -0.11
SMG6-215ENST00000574501 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.37□□□□□ -0.11
SMG6-215ENST00000574501 ZNF214Q9UL59 606 aaPredicted RBP14.37□□□□□ -0.11
SMG6-215ENST00000574501 OAS3Q9Y6K5 1087 aaKnown RBP14.37□□□□□ -0.11
SMG6-215ENST00000574501 ERI2A8K979 691 aaKnown RBP14.36□□□□□ -0.11
SMG6-215ENST00000574501 CAPN15O75808 1086 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 LRIG2O94898 1065 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 PCMT1P22061 227 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 DNAJB1P25685 340 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 CD40LGP29965 261 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 TGFBR1P36897 503 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 KPNA2P52292 529 aaKnown RBP14.36□□□□□ -0.11
SMG6-215ENST00000574501 DIO3P55073 304 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 COPZ1P61923 177 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 TSPY1Q01534 308 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 PPP1R8Q12972 351 aaKnown RBP14.36□□□□□ -0.11
SMG6-215ENST00000574501 DGUOKQ16854 277 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 TAS2R42Q7RTR8 314 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 PAGE2Q7Z2X7 111 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 RBM23Q86U06 439 aaKnown RBP14.36□□□□□ -0.11
SMG6-215ENST00000574501 AFG1LQ8WV93 481 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 NODALQ96S42 347 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 MARCH7Q9H992 704 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 FAM118AQ9NWS6 357 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 BTRCQ9Y297 605 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 ILVBLA1L0T0 632 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 EIF3FO00303 357 aaPredicted RBP14.36□□□□□ -0.11
SMG6-215ENST00000574501 ASNA1O43681 348 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 DLGAP3O95886 979 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 LINC00032P0C843 101 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 HGFP14210 728 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 CD47Q08722 323 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 ILF2Q12905 390 aaKnown RBP14.36□□□□□ -0.11
SMG6-215ENST00000574501 HIST2H2ACQ16777 129 aaPredicted RBP14.36□□□□□ -0.11
SMG6-215ENST00000574501 AGAP9Q5VTM2 703 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 LAIR2Q6ISS4 152 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 RALGPS2Q86X27 583 aaPredicted RBP14.36□□□□□ -0.11
SMG6-215ENST00000574501 DCP1BQ8IZD4 617 aaKnown RBP14.36□□□□□ -0.11
SMG6-215ENST00000574501 REPS2Q8NFH8 660 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 BPIFB1Q8TDL5 484 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 TUBGCP3Q96CW5 907 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 CCDC126Q96EE4 140 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 KIF12Q96FN5 646 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 DACH2Q96NX9 599 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 AMBRA1Q9C0C7 1298 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 MAGEE1Q9HCI5 957 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 FBXO8Q9NRD0 319 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 PIGVQ9NUD9 493 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 PNMA8BQ9ULN7 279 aaPredicted RBP14.36□□□□□ -0.11
SMG6-215ENST00000574501 UTRNP46939 3433 aa14.36□□□□□ -0.11
SMG6-215ENST00000574501 A0A1W2PQ67 120 aa14.35□□□□□ -0.11
SMG6-215ENST00000574501 LRRC14BA6NHZ5 514 aa14.35□□□□□ -0.11
SMG6-215ENST00000574501 NOTOA8MTQ0 251 aa14.35□□□□□ -0.11
SMG6-215ENST00000574501 ZNF99A8MXY4 864 aaPredicted RBP14.35□□□□□ -0.11
SMG6-215ENST00000574501 AP3B1O00203 1094 aa14.35□□□□□ -0.11
SMG6-215ENST00000574501 KCNK2O95069 426 aa14.35□□□□□ -0.11
SMG6-215ENST00000574501 SEC24AO95486 1093 aa14.35□□□□□ -0.11
SMG6-215ENST00000574501 UMPSP11172 480 aa14.35□□□□□ -0.11
SMG6-215ENST00000574501 OR4D2P58180 307 aa14.35□□□□□ -0.11
SMG6-215ENST00000574501 NCS1P62166 190 aa14.35□□□□□ -0.11
SMG6-215ENST00000574501 BST2Q10589 180 aaKnown RBP14.35□□□□□ -0.11
SMG6-215ENST00000574501 LY6KQ17RY6 165 aa14.35□□□□□ -0.11
SMG6-215ENST00000574501 PCID2Q5JVF3 399 aa14.35□□□□□ -0.11
SMG6-215ENST00000574501 UBE2UQ5VVX9 321 aa14.35□□□□□ -0.11
SMG6-215ENST00000574501 SYPL2Q5VXT5 272 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms