RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.7■■□□□ 1.22
VPS53-211ENST00000571805 ARMC1Q9NVT9 282 aa22.7■■□□□ 1.22
VPS53-211ENST00000571805 PADI4Q9UM07 663 aa22.7■■□□□ 1.22
VPS53-211ENST00000571805 OR6C75A6NL08 312 aa22.69■■□□□ 1.22
VPS53-211ENST00000571805 ZNF839A8K0R7 811 aa22.69■■□□□ 1.22
VPS53-211ENST00000571805 MATN4O95460 622 aa22.69■■□□□ 1.22
VPS53-211ENST00000571805 ZDHHC11BP0C7U3 371 aa22.69■■□□□ 1.22
VPS53-211ENST00000571805 CLCQ05315 142 aa22.69■■□□□ 1.22
VPS53-211ENST00000571805 GEN1Q17RS7 908 aa22.69■■□□□ 1.22
VPS53-211ENST00000571805 RGMBQ6NW40 437 aa22.69■■□□□ 1.22
VPS53-211ENST00000571805 DDIASQ8IXT1 998 aa22.69■■□□□ 1.22
VPS53-211ENST00000571805 LGI2Q8N0V4 545 aa22.69■■□□□ 1.22
VPS53-211ENST00000571805 MINDY1Q8N5J2 469 aa22.69■■□□□ 1.22
VPS53-211ENST00000571805 STAG3L4Q8TBR4 150 aa22.69■■□□□ 1.22
VPS53-211ENST00000571805 CANT1Q8WVQ1 401 aa22.69■■□□□ 1.22
VPS53-211ENST00000571805 ZUFSPQ96AP4 578 aa22.69■■□□□ 1.22
VPS53-211ENST00000571805 FAM193BQ96PV7 902 aaPredicted RBP22.69■■□□□ 1.22
VPS53-211ENST00000571805 EFHD1Q9BUP0 239 aa22.69■■□□□ 1.22
VPS53-211ENST00000571805 OSBPL11Q9BXB4 747 aa22.69■■□□□ 1.22
VPS53-211ENST00000571805 GPR62Q9BZJ7 368 aa22.69■■□□□ 1.22
VPS53-211ENST00000571805 SYTL2Q9HCH5 934 aa22.69■■□□□ 1.22
VPS53-211ENST00000571805 SLC52A3Q9NQ40 469 aa22.69■■□□□ 1.22
VPS53-211ENST00000571805 SDR39U1Q9NRG7 319 aaPredicted RBP22.69■■□□□ 1.22
VPS53-211ENST00000571805 FXYD1O00168 92 aa22.69■■□□□ 1.22
VPS53-211ENST00000571805 FMO4P31512 558 aa22.69■■□□□ 1.22
VPS53-211ENST00000571805 FCGRTP55899 365 aa22.69■■□□□ 1.22
VPS53-211ENST00000571805 MYLK3Q32MK0 819 aa22.69■■□□□ 1.22
VPS53-211ENST00000571805 RSPO2Q6UXX9 243 aaPredicted RBP22.69■■□□□ 1.22
VPS53-211ENST00000571805 CARM1Q86X55 608 aa22.69■■□□□ 1.22
VPS53-211ENST00000571805 FAM110BQ8TC76 370 aa22.69■■□□□ 1.22
VPS53-211ENST00000571805 SPATA17Q96L03 361 aa22.69■■□□□ 1.22
VPS53-211ENST00000571805 CIB1Q99828 191 aa22.69■■□□□ 1.22
VPS53-211ENST00000571805 IL1RL2Q9HB29 575 aa22.69■■□□□ 1.22
VPS53-211ENST00000571805 POLG2Q9UHN1 485 aa22.69■■□□□ 1.22
VPS53-211ENST00000571805 BRCA2P51587 3418 aa22.69■■□□□ 1.22
VPS53-211ENST00000571805 MTMR11A4FU01 709 aa22.68■■□□□ 1.22
VPS53-211ENST00000571805 RHOBTB1O94844 696 aa22.68■■□□□ 1.22
VPS53-211ENST00000571805 LINC00032P0C843 101 aa22.68■■□□□ 1.22
VPS53-211ENST00000571805 CHRM1P11229 460 aaPredicted RBP22.68■■□□□ 1.22
VPS53-211ENST00000571805 LBPP18428 481 aa22.68■■□□□ 1.22
VPS53-211ENST00000571805 EEF1DP29692 281 aaKnown RBP22.68■■□□□ 1.22
VPS53-211ENST00000571805 SLC6A4P31645 630 aa22.68■■□□□ 1.22
VPS53-211ENST00000571805 GRIA3P42263 894 aa22.68■■□□□ 1.22
VPS53-211ENST00000571805 RGRP47804 291 aa22.68■■□□□ 1.22
VPS53-211ENST00000571805 YBX1P67809 324 aaKnown RBP22.68■■□□□ 1.22
VPS53-211ENST00000571805 LCP2Q13094 533 aa22.68■■□□□ 1.22
VPS53-211ENST00000571805 SLC15A3Q8IY34 581 aa22.68■■□□□ 1.22
VPS53-211ENST00000571805 ANKFN1Q8N957 763 aa22.68■■□□□ 1.22
VPS53-211ENST00000571805 OR7D4Q8NG98 312 aa22.68■■□□□ 1.22
VPS53-211ENST00000571805 TUBGCP3Q96CW5 907 aa22.68■■□□□ 1.22
VPS53-211ENST00000571805 A0A1B0GTW7 788 aa22.68■■□□□ 1.22
VPS53-211ENST00000571805 UBA6A0AVT1 1052 aaPredicted RBP22.68■■□□□ 1.22
VPS53-211ENST00000571805 LCHNA4D1U4 455 aa22.68■■□□□ 1.22
VPS53-211ENST00000571805 F5H5T6 163 aa22.68■■□□□ 1.22
VPS53-211ENST00000571805 TLR5O60602 858 aa22.68■■□□□ 1.22
VPS53-211ENST00000571805 TIPRLO75663 272 aa22.68■■□□□ 1.22
VPS53-211ENST00000571805 BMP2P12643 396 aa22.68■■□□□ 1.22
VPS53-211ENST00000571805 HGFP14210 728 aa22.68■■□□□ 1.22
VPS53-211ENST00000571805 MAP7D1Q3KQU3 841 aa22.68■■□□□ 1.22
VPS53-211ENST00000571805 AP1ARQ63HQ0 302 aa22.68■■□□□ 1.22
VPS53-211ENST00000571805 PRMT9Q6P2P2 845 aa22.68■■□□□ 1.22
VPS53-211ENST00000571805 KLHDC10Q6PID8 442 aa22.68■■□□□ 1.22
VPS53-211ENST00000571805 ZFP28Q8NHY6 868 aa22.68■■□□□ 1.22
VPS53-211ENST00000571805 CYP2S1Q96SQ9 504 aa22.68■■□□□ 1.22
VPS53-211ENST00000571805 SEPT5Q99719 369 aaPredicted RBP22.68■■□□□ 1.22
VPS53-211ENST00000571805 TAS2R13Q9NYV9 303 aa22.68■■□□□ 1.22
VPS53-211ENST00000571805 RNF112Q9ULX5 631 aa22.68■■□□□ 1.22
VPS53-211ENST00000571805 FAM50BQ9Y247 325 aa22.68■■□□□ 1.22
VPS53-211ENST00000571805 BTRCQ9Y297 605 aa22.68■■□□□ 1.22
VPS53-211ENST00000571805 SUPT3HB4E1H0 165 aa22.67■■□□□ 1.22
VPS53-211ENST00000571805 C9JVG2 144 aa22.67■■□□□ 1.22
VPS53-211ENST00000571805 SUPT3HO75486 399 aa22.67■■□□□ 1.22
VPS53-211ENST00000571805 GNA12Q03113 381 aa22.67■■□□□ 1.22
VPS53-211ENST00000571805 RNF19BQ6ZMZ0 732 aa22.67■■□□□ 1.22
VPS53-211ENST00000571805 FBXO39Q8N4B4 442 aa22.67■■□□□ 1.22
VPS53-211ENST00000571805 PCSK9Q8NBP7 692 aaKnown RBP22.67■■□□□ 1.22
VPS53-211ENST00000571805 MDGA1Q8NFP4 955 aa22.67■■□□□ 1.22
VPS53-211ENST00000571805 DDI1Q8WTU0 396 aa22.67■■□□□ 1.22
VPS53-211ENST00000571805 PSKH2Q96QS6 385 aa22.67■■□□□ 1.22
VPS53-211ENST00000571805 MAGEH1Q9H213 219 aa22.67■■□□□ 1.22
VPS53-211ENST00000571805 CCM2LQ9NUG4 571 aaPredicted RBP22.67■■□□□ 1.22
VPS53-211ENST00000571805 ECI2O75521 394 aa22.67■■□□□ 1.22
VPS53-211ENST00000571805 HSD17B1P14061 328 aa22.67■■□□□ 1.22
VPS53-211ENST00000571805 PSMA3P25788 255 aa22.67■■□□□ 1.22
VPS53-211ENST00000571805 PRKCZQ05513 592 aa22.67■■□□□ 1.22
VPS53-211ENST00000571805 TSNQ15631 228 aaKnown RBP22.67■■□□□ 1.22
VPS53-211ENST00000571805 SAPCD2Q86UD0 394 aa22.67■■□□□ 1.22
VPS53-211ENST00000571805 MYO1HQ8N1T3 1032 aa22.67■■□□□ 1.22
VPS53-211ENST00000571805 OR4K2Q8NGD2 314 aa22.67■■□□□ 1.22
VPS53-211ENST00000571805 SEMA4BQ9NPR2 832 aaPredicted RBP22.67■■□□□ 1.22
VPS53-211ENST00000571805 CMTM6Q9NX76 183 aa22.67■■□□□ 1.22
VPS53-211ENST00000571805 ANGPT2O15123 496 aa22.66■■□□□ 1.22
VPS53-211ENST00000571805 STAMBPO95630 424 aa22.66■■□□□ 1.22
VPS53-211ENST00000571805 RPS17P08708 135 aaKnown RBP22.66■■□□□ 1.22
VPS53-211ENST00000571805 SLC10A3P09131 477 aa22.66■■□□□ 1.22
VPS53-211ENST00000571805 SPATA31D3P0C874 917 aa22.66■■□□□ 1.22
VPS53-211ENST00000571805 CKMT2P17540 419 aa22.66■■□□□ 1.22
VPS53-211ENST00000571805 KPNA1P52294 538 aaPredicted RBP22.66■■□□□ 1.22
VPS53-211ENST00000571805 ATP6V0D1P61421 351 aa22.66■■□□□ 1.22
VPS53-211ENST00000571805 ECT2LQ008S8 904 aa22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms