RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 FSD1LQ9BXM9 530 aa13.34□□□□□ -0.27
CLK3-216ENST00000564468 CLPBQ9H078 707 aa13.34□□□□□ -0.27
CLK3-216ENST00000564468 CYP4F12Q9HCS2 524 aa13.34□□□□□ -0.27
CLK3-216ENST00000564468 FGF22Q9HCT0 170 aa13.34□□□□□ -0.27
CLK3-216ENST00000564468 UBP1Q9NZI7 540 aa13.34□□□□□ -0.27
CLK3-216ENST00000564468 PNMA8BQ9ULN7 279 aaPredicted RBP13.34□□□□□ -0.27
CLK3-216ENST00000564468 AAR2Q9Y312 384 aaKnown RBP13.34□□□□□ -0.27
CLK3-216ENST00000564468 LOC400499M0QZD8 3231 aa13.34□□□□□ -0.27
CLK3-216ENST00000564468 FLNBO75369 2602 aaKnown RBP13.33□□□□□ -0.28
CLK3-216ENST00000564468 SMG1Q96Q15 3661 aaKnown RBP13.33□□□□□ -0.28
CLK3-216ENST00000564468 A0A0U1RQS6 177 aa13.33□□□□□ -0.28
CLK3-216ENST00000564468 EME2A4GXA9 379 aaPredicted RBP13.33□□□□□ -0.28
CLK3-216ENST00000564468 KCNN4O15554 427 aa13.33□□□□□ -0.28
CLK3-216ENST00000564468 IVLP07476 585 aa13.33□□□□□ -0.28
CLK3-216ENST00000564468 HLA-DPA1P20036 260 aa13.33□□□□□ -0.28
CLK3-216ENST00000564468 RPS6KA1Q15418 735 aa13.33□□□□□ -0.28
CLK3-216ENST00000564468 ANKRD20A2Q5SQ80 823 aa13.33□□□□□ -0.28
CLK3-216ENST00000564468 ANKRD20A1Q5TYW2 823 aa13.33□□□□□ -0.28
CLK3-216ENST00000564468 ANKRD20A3Q5VUR7 823 aa13.33□□□□□ -0.28
CLK3-216ENST00000564468 AADACL2Q6P093 401 aa13.33□□□□□ -0.28
CLK3-216ENST00000564468 KDELC1Q6UW63 502 aa13.33□□□□□ -0.28
CLK3-216ENST00000564468 LYSMD3Q7Z3D4 306 aa13.33□□□□□ -0.28
CLK3-216ENST00000564468 TMC3Q7Z5M5 1100 aa13.33□□□□□ -0.28
CLK3-216ENST00000564468 TAF8Q7Z7C8 310 aa13.33□□□□□ -0.28
CLK3-216ENST00000564468 TRIM58Q8NG06 486 aa13.33□□□□□ -0.28
CLK3-216ENST00000564468 HERPUD2Q9BSE4 406 aa13.33□□□□□ -0.28
CLK3-216ENST00000564468 RIOK2Q9BVS4 552 aaKnown RBP13.33□□□□□ -0.28
CLK3-216ENST00000564468 GSDMCQ9BYG8 508 aa13.33□□□□□ -0.28
CLK3-216ENST00000564468 FRMD8Q9BZ67 464 aaPredicted RBP13.33□□□□□ -0.28
CLK3-216ENST00000564468 FRMD8P1Q9BZ68 369 aaPredicted RBP13.33□□□□□ -0.28
CLK3-216ENST00000564468 ABCG4Q9H172 646 aa13.33□□□□□ -0.28
CLK3-216ENST00000564468 GBA3Q9H227 469 aa13.33□□□□□ -0.28
CLK3-216ENST00000564468 CARS2Q9HA77 564 aaKnown RBP13.33□□□□□ -0.28
CLK3-216ENST00000564468 TRNAU1APQ9NX07 287 aaKnown RBP13.33□□□□□ -0.28
CLK3-216ENST00000564468 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.33□□□□□ -0.28
CLK3-216ENST00000564468 SLC17A4Q9Y2C5 497 aa13.33□□□□□ -0.28
CLK3-216ENST00000564468 ZNF711Q9Y462 761 aa13.33□□□□□ -0.28
CLK3-216ENST00000564468 GCN1Q92616 2671 aaKnown RBP13.32□□□□□ -0.28
CLK3-216ENST00000564468 ASMTLO95671 621 aa13.32□□□□□ -0.28
CLK3-216ENST00000564468 FGF1P05230 155 aa13.32□□□□□ -0.28
CLK3-216ENST00000564468 CEACAM5P06731 702 aa13.32□□□□□ -0.28
CLK3-216ENST00000564468 DCDC1P59894 354 aa13.32□□□□□ -0.28
CLK3-216ENST00000564468 CCZ1BP86790 482 aa13.32□□□□□ -0.28
CLK3-216ENST00000564468 CCZ1P86791 482 aaPredicted RBP13.32□□□□□ -0.28
CLK3-216ENST00000564468 ILF3Q12906 894 aaKnown RBP eCLIP13.32□□□□□ -0.28
CLK3-216ENST00000564468 KLF1Q13351 362 aaPredicted RBP13.32□□□□□ -0.28
CLK3-216ENST00000564468 SLC1A5Q15758 541 aa13.32□□□□□ -0.28
CLK3-216ENST00000564468 HENMT1Q5T8I9 393 aaKnown RBP13.32□□□□□ -0.28
CLK3-216ENST00000564468 ZDHHC20Q5W0Z9 365 aa13.32□□□□□ -0.28
CLK3-216ENST00000564468 PDPK2PQ6A1A2 396 aa13.32□□□□□ -0.28
CLK3-216ENST00000564468 RFLNAQ6ZTI6 216 aa13.32□□□□□ -0.28
CLK3-216ENST00000564468 ARL10Q8N8L6 244 aa13.32□□□□□ -0.28
CLK3-216ENST00000564468 IPMKQ8NFU5 416 aa13.32□□□□□ -0.28
CLK3-216ENST00000564468 WDR48Q8TAF3 677 aa13.32□□□□□ -0.28
CLK3-216ENST00000564468 IFI44Q8TCB0 444 aa13.32□□□□□ -0.28
CLK3-216ENST00000564468 MRGPRX2Q96LB1 330 aa13.32□□□□□ -0.28
CLK3-216ENST00000564468 SPATA13Q96N96 652 aa13.32□□□□□ -0.28
CLK3-216ENST00000564468 ZSCAN5AQ9BUG6 496 aa13.32□□□□□ -0.28
CLK3-216ENST00000564468 CCDC86Q9H6F5 360 aaKnown RBP13.32□□□□□ -0.28
CLK3-216ENST00000564468 CAAP1Q9H8G2 361 aa13.32□□□□□ -0.28
CLK3-216ENST00000564468 LZTFL1Q9NQ48 299 aa13.32□□□□□ -0.28
CLK3-216ENST00000564468 MRPL40Q9NQ50 206 aaKnown RBP13.32□□□□□ -0.28
CLK3-216ENST00000564468 NFKBIL1Q9UBC1 381 aaPredicted RBP13.32□□□□□ -0.28
CLK3-216ENST00000564468 GULP1Q9UBP9 304 aa13.32□□□□□ -0.28
CLK3-216ENST00000564468 PADI4Q9UM07 663 aa13.32□□□□□ -0.28
CLK3-216ENST00000564468 GPR34Q9UPC5 381 aa13.32□□□□□ -0.28
CLK3-216ENST00000564468 SHOC2Q9UQ13 582 aa13.32□□□□□ -0.28
CLK3-216ENST00000564468 GPSM3Q9Y4H4 160 aa13.32□□□□□ -0.28
CLK3-216ENST00000564468 LY6G6EA0A0G2JKS1 128 aa13.31□□□□□ -0.28
CLK3-216ENST00000564468 CPED1A4D0V7 1026 aa13.31□□□□□ -0.28
CLK3-216ENST00000564468 C5orf60A6NFR6 353 aa13.31□□□□□ -0.28
CLK3-216ENST00000564468 SOD1P00441 154 aa13.31□□□□□ -0.28
CLK3-216ENST00000564468 PIRTP0C851 137 aa13.31□□□□□ -0.28
CLK3-216ENST00000564468 HMGCLP35914 325 aa13.31□□□□□ -0.28
CLK3-216ENST00000564468 GNPDA1P46926 289 aa13.31□□□□□ -0.28
CLK3-216ENST00000564468 SIRPB2Q5JXA9 342 aa13.31□□□□□ -0.28
CLK3-216ENST00000564468 HES3Q5TGS1 186 aa13.31□□□□□ -0.28
CLK3-216ENST00000564468 MEI1Q5TIA1 1274 aa13.31□□□□□ -0.28
CLK3-216ENST00000564468 EFL1Q7Z2Z2 1120 aaKnown RBP13.31□□□□□ -0.28
CLK3-216ENST00000564468 PDZD3Q86UT5 571 aa13.31□□□□□ -0.28
CLK3-216ENST00000564468 SLC35F3Q8IY50 421 aa13.31□□□□□ -0.28
CLK3-216ENST00000564468 TRAM1L1Q8N609 369 aa13.31□□□□□ -0.28
CLK3-216ENST00000564468 PDCD7Q8N8D1 485 aaKnown RBP13.31□□□□□ -0.28
CLK3-216ENST00000564468 FAM46DQ8NEK8 389 aa13.31□□□□□ -0.28
CLK3-216ENST00000564468 MAPK15Q8TD08 544 aa13.31□□□□□ -0.28
CLK3-216ENST00000564468 GPBAR1Q8TDU6 330 aa13.31□□□□□ -0.28
CLK3-216ENST00000564468 OXNAD1Q96HP4 312 aaPredicted RBP13.31□□□□□ -0.28
CLK3-216ENST00000564468 COX14Q96I36 57 aa13.31□□□□□ -0.28
CLK3-216ENST00000564468 SPATA16Q9BXB7 569 aa13.31□□□□□ -0.28
CLK3-216ENST00000564468 TMEM168Q9H0V1 697 aa13.31□□□□□ -0.28
CLK3-216ENST00000564468 CARD9Q9H257 536 aa13.31□□□□□ -0.28
CLK3-216ENST00000564468 RMI1Q9H9A7 625 aa13.31□□□□□ -0.28
CLK3-216ENST00000564468 VPS18Q9P253 973 aa13.31□□□□□ -0.28
CLK3-216ENST00000564468 SUFUQ9UMX1 484 aa13.31□□□□□ -0.28
CLK3-216ENST00000564468 U3KQA8 63 aa13.31□□□□□ -0.28
CLK3-216ENST00000564468 ACACAQ13085 2346 aa13.31□□□□□ -0.28
CLK3-216ENST00000564468 SETXQ7Z333 2677 aaKnown RBP13.31□□□□□ -0.28
CLK3-216ENST00000564468 INPP4BO15327 924 aa13.3□□□□□ -0.28
CLK3-216ENST00000564468 PSMD3O43242 534 aa13.3□□□□□ -0.28
CLK3-216ENST00000564468 OPA1O60313 960 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms