RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 PHGDHO43175 533 aaKnown RBP7.48□□□□□ -1.21
VPS39-204ENST00000561818 SNAP91O60641 907 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 KATNA1O75449 491 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 CIB2O75838 187 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 PIAS1O75925 651 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 ARHGEF15O94989 841 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 WISP3O95389 354 aaPredicted RBP7.48□□□□□ -1.21
VPS39-204ENST00000561818 PRAMEF1O95521 474 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 FTH1P02794 183 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 OR56A5P0C7T3 313 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 THRAP10827 490 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 SRCP12931 536 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 TFEBP19484 476 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 SAT1P21673 171 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 GABRB3P28472 473 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 SERPINB3P29508 390 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 HLA-FP30511 346 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 DGKGP49619 791 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 SGSHP51688 502 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 NAGLUP54802 743 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 ALDH18A1P54886 795 aaKnown RBP7.48□□□□□ -1.21
VPS39-204ENST00000561818 INHBCP55103 352 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 PKNOX1P55347 436 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 STX1BP61266 288 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 NCALDP61601 193 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 IRX4P78413 519 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 GRIK2Q13002 908 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 OLIG2Q13516 323 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 ELAVL3Q14576 367 aaKnown RBP7.48□□□□□ -1.21
VPS39-204ENST00000561818 SNCBQ16143 134 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 ZNF284Q2VY69 593 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 SPATS1Q496A3 300 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 WASHC2DQ5SRD0 308 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 FAM46CQ5VWP2 391 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 CES5AQ6NT32 575 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 CYB5D1Q6P9G0 228 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 CNSTQ6PJW8 725 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 EPGNQ6UW88 154 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 GDPD4Q6W3E5 623 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 RNF165Q6ZSG1 346 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 TRIM67Q6ZTA4 783 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 FRMD7Q6ZUT3 714 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 NEK10Q6ZWH5 1172 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 FRA10AC1Q70Z53 315 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 NLRP8Q86W28 1048 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 HS6ST3Q8IZP7 471 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 RIN3Q8TB24 985 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 ACTRT2Q8TDY3 377 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 TSPEARQ8WU66 669 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 PIH1D2Q8WWB5 315 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 JADE3Q92613 823 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 SMARCD2Q92925 531 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 POP5Q969H6 163 aaKnown RBP7.48□□□□□ -1.21
VPS39-204ENST00000561818 MYEOVQ96EZ4 313 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 DCUN1D1Q96GG9 259 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 ZNF514Q96K75 400 aaPredicted RBP7.48□□□□□ -1.21
VPS39-204ENST00000561818 LMLNQ96KR4 655 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 GPR78Q96P69 363 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 SLC22A12Q96S37 553 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 COPS8Q99627 209 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 BTBD10Q9BSF8 475 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 TACO1Q9BSH4 297 aaKnown RBP7.48□□□□□ -1.21
VPS39-204ENST00000561818 MECRQ9BV79 373 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 POMKQ9H5K3 350 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 CAB39LQ9H9S4 337 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 RDH14Q9HBH5 336 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 IGSF5Q9NSI5 407 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 SPATS2LQ9NUQ6 558 aaKnown RBP7.48□□□□□ -1.21
VPS39-204ENST00000561818 POLR3BQ9NW08 1133 aaPredicted RBP7.48□□□□□ -1.21
VPS39-204ENST00000561818 DUS2Q9NX74 493 aaKnown RBP7.48□□□□□ -1.21
VPS39-204ENST00000561818 CXXC1Q9P0U4 656 aaPredicted RBP7.48□□□□□ -1.21
VPS39-204ENST00000561818 HECAQ9UBI9 543 aaPredicted RBP7.48□□□□□ -1.21
VPS39-204ENST00000561818 SUN2Q9UH99 717 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 CRLS1Q9UJA2 301 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 RNF112Q9ULX5 631 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 FCF1Q9Y324 198 aaKnown RBP7.48□□□□□ -1.21
VPS39-204ENST00000561818 PCDHGC4Q9Y5F7 938 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 CENPFP49454 3210 aa7.48□□□□□ -1.21
VPS39-204ENST00000561818 PCNTO95613 3336 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 NUP210Q8TEM1 1887 aaPredicted RBP7.47□□□□□ -1.21
VPS39-204ENST00000561818 EDDM13A0A1B0GTR0 161 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 BBIP1A8MTZ0 92 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 HIDE1A8MVS5 230 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 FOXO6A8MYZ6 492 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 C1QTNF3-AMACRE9PGA6 284 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 GOLGA8TH3BQL2 631 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 SLC16A5O15375 505 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 DIAPH2O60879 1101 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 CRCPO75575 148 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 RASSF9O75901 435 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 CD160O95971 181 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 C8GP07360 202 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 FGF4P08620 206 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 GFAPP14136 432 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 CD1DP15813 335 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 EN2P19622 333 aaPredicted RBP7.47□□□□□ -1.21
VPS39-204ENST00000561818 MSH3P20585 1137 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 FSHRP23945 695 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 ACRV1P26436 265 aa7.47□□□□□ -1.21
VPS39-204ENST00000561818 VIPR1P32241 457 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms