RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 RAET1EQ8TD07 263 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 KIAA1191Q96A73 305 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 MOCOSQ96EN8 888 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 FRMD6Q96NE9 622 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 EFHD1Q9BUP0 239 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 NUSAP1Q9BXS6 441 aaKnown RBP7.25□□□□□ -1.25
VPS13C-206ENST00000558338 ADGRE3Q9BY15 652 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 UNKQ9C0B0 810 aaKnown RBP7.25□□□□□ -1.25
VPS13C-206ENST00000558338 EBF3Q9H4W6 596 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 CWH43Q9H720 699 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 ACSS2Q9NR19 701 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 RNF186Q9NXI6 227 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 CACNA2D2Q9NY47 1150 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 ADA2Q9NZK5 511 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 CROTQ9UKG9 612 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 CNOT11Q9UKZ1 510 aaKnown RBP7.25□□□□□ -1.25
VPS13C-206ENST00000558338 SLC27A5Q9Y2P5 690 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 CRYL1Q9Y2S2 319 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 NDUFAF1Q9Y375 327 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 ARL5AQ9Y689 179 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 GBF1Q92538 1859 aa7.25□□□□□ -1.25
VPS13C-206ENST00000558338 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP7.24□□□□□ -1.25
VPS13C-206ENST00000558338 PRSS51A0A1B0GVH4 220 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 OR51F1A6NGY5 319 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 H0YJX3 145 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 STX16-NPEPL1H3BU86 382 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 STX16O14662 325 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 MRASO14807 208 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 AZIN1O14977 448 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 DENRO43583 198 aaKnown RBP7.24□□□□□ -1.25
VPS13C-206ENST00000558338 AP1G1O43747 822 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 AHCYL1O43865 530 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 NRP2O60462 931 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 VPS26AO75436 327 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 SORBS2O94875 1100 aaKnown RBP7.24□□□□□ -1.25
VPS13C-206ENST00000558338 LATS1O95835 1130 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 C8BP07358 591 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 UBTFL6P0CB48 400 aaPredicted RBP7.24□□□□□ -1.25
VPS13C-206ENST00000558338 GFAPP14136 432 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 VCLP18206 1134 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 PPP3CCP48454 512 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 MRPL19P49406 292 aaKnown RBP7.24□□□□□ -1.25
VPS13C-206ENST00000558338 TTPAP49638 278 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 PLK1P53350 603 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 C1QTNF8P60827 252 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 DAB2P98082 770 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 DUSP4Q13115 394 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 ZNF177Q13360 481 aaPredicted RBP7.24□□□□□ -1.25
VPS13C-206ENST00000558338 CEACAM7Q14002 265 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 LRP8Q14114 963 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 TRIM25Q14258 630 aaKnown RBP7.24□□□□□ -1.25
VPS13C-206ENST00000558338 GRM2Q14416 872 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 GEN1Q17RS7 908 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 PABPC1LQ4VXU2 614 aaKnown RBP7.24□□□□□ -1.25
VPS13C-206ENST00000558338 COQ5Q5HYK3 327 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 RTP2Q5QGT7 225 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 HECTD3Q5T447 861 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 KANK2Q63ZY3 851 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 SLC8B1Q6J4K2 584 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 UGT3A1Q6NUS8 523 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 TMEM207Q6UWW9 146 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 RNF111Q6ZNA4 994 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 LARP4Q71RC2 724 aaKnown RBP eCLIP7.24□□□□□ -1.25
VPS13C-206ENST00000558338 PIM3Q86V86 326 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 STK40Q8N2I9 435 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 FBXO39Q8N4B4 442 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 MARVELD2Q8N4S9 558 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 SHKBP1Q8TBC3 707 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 GPR152Q8TDT2 470 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 TSPEARQ8WU66 669 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 USP13Q92995 863 aaPredicted RBP7.24□□□□□ -1.25
VPS13C-206ENST00000558338 TBRG4Q969Z0 631 aaKnown RBP eCLIP7.24□□□□□ -1.25
VPS13C-206ENST00000558338 PTERQ96BW5 349 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 DCUN1D1Q96GG9 259 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 CDKN2AIPNLQ96HQ2 116 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 ATOH8Q96SQ7 321 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 TSC22D3Q99576 134 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 NPAS2Q99743 824 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 CCT7Q99832 543 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 NDUFA13Q9P0J0 144 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 MTRRQ9UBK8 725 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 RIMS3Q9UJD0 308 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 RNF112Q9ULX5 631 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 PHF24Q9UPV7 400 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 MTF2Q9Y483 593 aaPredicted RBP7.24□□□□□ -1.25
VPS13C-206ENST00000558338 PCDHGA7Q9Y5G6 932 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 BACE2Q9Y5Z0 518 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 ZFP37Q9Y6Q3 630 aaPredicted RBP7.24□□□□□ -1.25
VPS13C-206ENST00000558338 TANC1Q9C0D5 1861 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 TTC3P53804 2025 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 UBA6A0AVT1 1052 aaPredicted RBP7.24□□□□□ -1.25
VPS13C-206ENST00000558338 TYW5A2RUC4 315 aaKnown RBP7.24□□□□□ -1.25
VPS13C-206ENST00000558338 EIF4E1BA6NMX2 242 aaKnown RBP7.24□□□□□ -1.25
VPS13C-206ENST00000558338 SUPT3HB4E1H0 165 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 ACOT8O14734 319 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 GIPC1O14908 333 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 MUSKO15146 869 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 TRIM24O15164 1050 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 SUPT3HO75486 399 aa7.24□□□□□ -1.25
VPS13C-206ENST00000558338 CRCPO75575 148 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms