RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 ADRM1Q16186 407 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 CNPY1Q3B7I2 92 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 ZDHHC20Q5W0Z9 365 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 MYLK4Q86YV6 388 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-229ENST00000557348 CEP97Q8IW35 865 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 APCDD1Q8J025 514 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 AFAP1L2Q8N4X5 818 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 TTC16Q8NEE8 873 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 OR4K2Q8NGD2 314 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 OR13C4Q8NGS5 318 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 IRF7Q92985 503 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 UBXN10Q96LJ8 280 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 ECSITQ9BQ95 431 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 CPEB1Q9BZB8 566 aaKnown RBP12.61□□□□□ -0.39
SHMT2-229ENST00000557348 DRC3Q9H069 523 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 ILKAPQ9H0C8 392 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-229ENST00000557348 KCNK13Q9HB14 408 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 MRGBPQ9NV56 204 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 HCFC1R1Q9NWW0 138 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 TAS2R13Q9NYV9 303 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 TAS2R1Q9NYW7 299 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 NCKIPSDQ9NZQ3 722 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 XPR1Q9UBH6 696 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 HEY2Q9UBP5 337 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 APPL1Q9UKG1 709 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 SLC8A2Q9UPR5 921 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 DNAJC16Q9Y2G8 782 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 ZNF711Q9Y462 761 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 PCDHB9Q9Y5E1 797 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 SPO11Q9Y5K1 396 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 ACTL7AQ9Y615 435 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 DENND4CQ5VZ89 1909 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 TARM1B6A8C7 271 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 H0Y3Z8 333 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 MOSPD3O75425 235 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 EPCAMP16422 314 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 GJA1P17302 382 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 PGM1P36871 562 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 AQP5P55064 265 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 CACNG1Q06432 222 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 PRKAA1Q13131 559 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 GPM6BQ13491 265 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 CFAP157Q5JU67 520 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 LYPLAL1Q5VWZ2 237 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 ZCCHC23Q6ZST2 131 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 MFSD6LQ8IWD5 586 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 TTC30BQ8N4P2 665 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 CELF5Q8N6W0 485 aaKnown RBP12.61□□□□□ -0.39
SHMT2-229ENST00000557348 PAF1Q8N7H5 531 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 ACVR1CQ8NER5 493 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 MDGA1Q8NFP4 955 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 NXNL1Q96CM4 212 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 LMLNQ96KR4 655 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 ZNF641Q96N77 438 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-229ENST00000557348 GPR78Q96P69 363 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 CDCA3Q99618 268 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-229ENST00000557348 AARSD1Q9BTE6 412 aaKnown RBP12.61□□□□□ -0.39
SHMT2-229ENST00000557348 TRMOQ9BU70 441 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 BBS2Q9BXC9 721 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 GPR63Q9BZJ6 419 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 PIDD1Q9HB75 910 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 TIMMDC1Q9NPL8 285 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 ZNF358Q9NW07 568 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 MARCH4Q9P2E8 410 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-229ENST00000557348 VTI1BQ9UEU0 232 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 ITGB1BP2Q9UKP3 347 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 MRPS23Q9Y3D9 190 aaKnown RBP12.61□□□□□ -0.39
SHMT2-229ENST00000557348 RAP2CQ9Y3L5 183 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 KCTD3Q9Y597 815 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 SLC30A1Q9Y6M5 507 aa12.61□□□□□ -0.39
SHMT2-229ENST00000557348 TK2O00142 265 aa12.6□□□□□ -0.39
SHMT2-229ENST00000557348 COQ9O75208 318 aa12.6□□□□□ -0.39
SHMT2-229ENST00000557348 WISP3O95389 354 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-229ENST00000557348 PIRTP0C851 137 aa12.6□□□□□ -0.39
SHMT2-229ENST00000557348 PABPC1P11940 636 aaKnown RBP12.6□□□□□ -0.39
SHMT2-229ENST00000557348 SRCP12931 536 aa12.6□□□□□ -0.39
SHMT2-229ENST00000557348 SYN1P17600 705 aa12.6□□□□□ -0.39
SHMT2-229ENST00000557348 CD70P32970 193 aa12.6□□□□□ -0.39
SHMT2-229ENST00000557348 NNMTP40261 264 aa12.6□□□□□ -0.39
SHMT2-229ENST00000557348 PTGER3P43115 390 aa12.6□□□□□ -0.39
SHMT2-229ENST00000557348 PDAP1Q13442 181 aaKnown RBP12.6□□□□□ -0.39
SHMT2-229ENST00000557348 TECRLQ5HYJ1 363 aa12.6□□□□□ -0.39
SHMT2-229ENST00000557348 RBM20Q5T481 1227 aaKnown RBP12.6□□□□□ -0.39
SHMT2-229ENST00000557348 PRPF38BQ5VTL8 546 aaKnown RBP12.6□□□□□ -0.39
SHMT2-229ENST00000557348 UGT3A1Q6NUS8 523 aa12.6□□□□□ -0.39
SHMT2-229ENST00000557348 C22orf39Q6P5X5 142 aa12.6□□□□□ -0.39
SHMT2-229ENST00000557348 AHI1Q8N157 1196 aa12.6□□□□□ -0.39
SHMT2-229ENST00000557348 CBARPQ8N350 705 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-229ENST00000557348 RHEBL1Q8TAI7 183 aa12.6□□□□□ -0.39
SHMT2-229ENST00000557348 WFIKKN2Q8TEU8 576 aa12.6□□□□□ -0.39
SHMT2-229ENST00000557348 UCMAQ8WVF2 138 aa12.6□□□□□ -0.39
SHMT2-229ENST00000557348 NRG4Q8WWG1 115 aa12.6□□□□□ -0.39
SHMT2-229ENST00000557348 BHMTQ93088 406 aa12.6□□□□□ -0.39
SHMT2-229ENST00000557348 DGCR14Q96DF8 476 aaKnown RBP12.6□□□□□ -0.39
SHMT2-229ENST00000557348 TCEAL4Q96EI5 215 aa12.6□□□□□ -0.39
SHMT2-229ENST00000557348 HIC2Q96JB3 615 aa12.6□□□□□ -0.39
SHMT2-229ENST00000557348 FAR2Q96K12 515 aa12.6□□□□□ -0.39
SHMT2-229ENST00000557348 CNDP1Q96KN2 507 aa12.6□□□□□ -0.39
SHMT2-229ENST00000557348 LYSMD1Q96S90 227 aa12.6□□□□□ -0.39
SHMT2-229ENST00000557348 EML4Q9HC35 981 aaKnown RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms