RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 MOSPD1Q9UJG1 213 aa13.52□□□□□ -0.25
SHMT2-228ENST00000557302 PCOLCE2Q9UKZ9 415 aa13.52□□□□□ -0.25
SHMT2-228ENST00000557302 PNMA8BQ9ULN7 279 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-228ENST00000557302 BTBD3Q9Y2F9 522 aa13.52□□□□□ -0.25
SHMT2-228ENST00000557302 PKP3Q9Y446 797 aa13.52□□□□□ -0.25
SHMT2-228ENST00000557302 SPTBN2O15020 2390 aa13.52□□□□□ -0.25
SHMT2-228ENST00000557302 NEMP2A6NFY4 417 aa13.51□□□□□ -0.25
SHMT2-228ENST00000557302 C2orf81A6NN90 581 aa13.51□□□□□ -0.25
SHMT2-228ENST00000557302 INPP4BO15327 924 aa13.51□□□□□ -0.25
SHMT2-228ENST00000557302 STX7O15400 261 aaKnown RBP13.51□□□□□ -0.25
SHMT2-228ENST00000557302 AQP9O43315 295 aa13.51□□□□□ -0.25
SHMT2-228ENST00000557302 CBFA2T3O75081 653 aa13.51□□□□□ -0.25
SHMT2-228ENST00000557302 PPFIA2O75334 1257 aa13.51□□□□□ -0.25
SHMT2-228ENST00000557302 CRTAMO95727 393 aa13.51□□□□□ -0.25
SHMT2-228ENST00000557302 FNTAP49354 379 aa13.51□□□□□ -0.25
SHMT2-228ENST00000557302 ETF1P62495 437 aaKnown RBP13.51□□□□□ -0.25
SHMT2-228ENST00000557302 PDE1BQ01064 536 aa13.51□□□□□ -0.25
SHMT2-228ENST00000557302 TAF1AQ15573 450 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-228ENST00000557302 HS1BP3Q53T59 392 aa13.51□□□□□ -0.25
SHMT2-228ENST00000557302 PRRT3Q5FWE3 981 aa13.51□□□□□ -0.25
SHMT2-228ENST00000557302 PPM1JQ5JR12 505 aa13.51□□□□□ -0.25
SHMT2-228ENST00000557302 PSAPL1Q6NUJ1 521 aa13.51□□□□□ -0.25
SHMT2-228ENST00000557302 TTC27Q6P3X3 843 aa13.51□□□□□ -0.25
SHMT2-228ENST00000557302 CCDC137Q6PK04 289 aaKnown RBP13.51□□□□□ -0.25
SHMT2-228ENST00000557302 DOK6Q6PKX4 331 aa13.51□□□□□ -0.25
SHMT2-228ENST00000557302 PPP1R21Q6ZMI0 780 aa13.51□□□□□ -0.25
SHMT2-228ENST00000557302 RD3Q7Z3Z2 195 aa13.51□□□□□ -0.25
SHMT2-228ENST00000557302 SLC25A45Q8N413 288 aa13.51□□□□□ -0.25
SHMT2-228ENST00000557302 TRAM1L1Q8N609 369 aa13.51□□□□□ -0.25
SHMT2-228ENST00000557302 EID2Q8N6I1 236 aa13.51□□□□□ -0.25
SHMT2-228ENST00000557302 BRSK1Q8TDC3 778 aa13.51□□□□□ -0.25
SHMT2-228ENST00000557302 LMX1AQ8TE12 382 aa13.51□□□□□ -0.25
SHMT2-228ENST00000557302 PDXPQ96GD0 296 aa13.51□□□□□ -0.25
SHMT2-228ENST00000557302 TBATAQ96M53 351 aa13.51□□□□□ -0.25
SHMT2-228ENST00000557302 PLEKHG4BQ96PX9 1271 aa13.51□□□□□ -0.25
SHMT2-228ENST00000557302 CDC6Q99741 560 aa13.51□□□□□ -0.25
SHMT2-228ENST00000557302 TCEAL2Q9H3H9 227 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-228ENST00000557302 CAAP1Q9H8G2 361 aa13.51□□□□□ -0.25
SHMT2-228ENST00000557302 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.51□□□□□ -0.25
SHMT2-228ENST00000557302 ARL5AQ9Y689 179 aa13.51□□□□□ -0.25
SHMT2-228ENST00000557302 CSNK1G3Q9Y6M4 447 aa13.51□□□□□ -0.25
SHMT2-228ENST00000557302 DGKBQ9Y6T7 804 aa13.51□□□□□ -0.25
SHMT2-228ENST00000557302 PRSS38A1L453 326 aa13.5□□□□□ -0.25
SHMT2-228ENST00000557302 FADS2P1A8MWK0 482 aa13.5□□□□□ -0.25
SHMT2-228ENST00000557302 GIPC1O14908 333 aa13.5□□□□□ -0.25
SHMT2-228ENST00000557302 SCAMP1O15126 338 aa13.5□□□□□ -0.25
SHMT2-228ENST00000557302 FANCGO15287 622 aa13.5□□□□□ -0.25
SHMT2-228ENST00000557302 FFAR2O15552 330 aa13.5□□□□□ -0.25
SHMT2-228ENST00000557302 BUD23O43709 281 aaKnown RBP13.5□□□□□ -0.25
SHMT2-228ENST00000557302 SUN1O94901 812 aa13.5□□□□□ -0.25
SHMT2-228ENST00000557302 GAS8O95995 478 aa13.5□□□□□ -0.25
SHMT2-228ENST00000557302 TNFP01375 233 aa13.5□□□□□ -0.25
SHMT2-228ENST00000557302 KRT14P02533 472 aa13.5□□□□□ -0.25
SHMT2-228ENST00000557302 CEACAM5P06731 702 aa13.5□□□□□ -0.25
SHMT2-228ENST00000557302 APRTP07741 180 aa13.5□□□□□ -0.25
SHMT2-228ENST00000557302 ALPPL2P10696 532 aa13.5□□□□□ -0.25
SHMT2-228ENST00000557302 CTSEP14091 401 aa13.5□□□□□ -0.25
SHMT2-228ENST00000557302 TPH1P17752 444 aa13.5□□□□□ -0.25
SHMT2-228ENST00000557302 LPOP22079 712 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-228ENST00000557302 CASQ1P31415 396 aa13.5□□□□□ -0.25
SHMT2-228ENST00000557302 SPAM1P38567 509 aa13.5□□□□□ -0.25
SHMT2-228ENST00000557302 BASP1P80723 227 aaKnown RBP13.5□□□□□ -0.25
SHMT2-228ENST00000557302 CDH17Q12864 832 aa13.5□□□□□ -0.25
SHMT2-228ENST00000557302 MSLNQ13421 630 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-228ENST00000557302 ELOCQ15369 112 aa13.5□□□□□ -0.25
SHMT2-228ENST00000557302 TRIP13Q15645 432 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-228ENST00000557302 TRIP6Q15654 476 aaKnown RBP13.5□□□□□ -0.25
SHMT2-228ENST00000557302 PDPK2PQ6A1A2 396 aa13.5□□□□□ -0.25
SHMT2-228ENST00000557302 NYAP1Q6ZVC0 841 aa13.5□□□□□ -0.25
SHMT2-228ENST00000557302 TRIM74Q86UV6 250 aa13.5□□□□□ -0.25
SHMT2-228ENST00000557302 CREG2Q8IUH2 290 aa13.5□□□□□ -0.25
SHMT2-228ENST00000557302 FSTL5Q8N475 847 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-228ENST00000557302 DNAAF3Q8N9W5 541 aa13.5□□□□□ -0.25
SHMT2-228ENST00000557302 OR52K1Q8NGK4 314 aa13.5□□□□□ -0.25
SHMT2-228ENST00000557302 BAHD1Q8TBE0 780 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-228ENST00000557302 GRK7Q8WTQ7 553 aa13.5□□□□□ -0.25
SHMT2-228ENST00000557302 COX14Q96I36 57 aa13.5□□□□□ -0.25
SHMT2-228ENST00000557302 LRRC61Q9BV99 259 aa13.5□□□□□ -0.25
SHMT2-228ENST00000557302 FRMD8Q9BZ67 464 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-228ENST00000557302 CARS2Q9HA77 564 aaKnown RBP13.5□□□□□ -0.25
SHMT2-228ENST00000557302 CYP4F12Q9HCS2 524 aa13.5□□□□□ -0.25
SHMT2-228ENST00000557302 MRPL40Q9NQ50 206 aaKnown RBP13.5□□□□□ -0.25
SHMT2-228ENST00000557302 EIF2B3Q9NR50 452 aaKnown RBP13.5□□□□□ -0.25
SHMT2-228ENST00000557302 PIH1D1Q9NWS0 290 aaKnown RBP13.5□□□□□ -0.25
SHMT2-228ENST00000557302 FTSJ1Q9UET6 329 aa13.5□□□□□ -0.25
SHMT2-228ENST00000557302 GLYATL1P3A0A0U1RQE8 302 aa13.49□□□□□ -0.25
SHMT2-228ENST00000557302 ASMTLO95671 621 aa13.49□□□□□ -0.25
SHMT2-228ENST00000557302 PAFAH1B1P43034 410 aa13.49□□□□□ -0.25
SHMT2-228ENST00000557302 VPS41P49754 854 aa13.49□□□□□ -0.25
SHMT2-228ENST00000557302 C1orf61Q13536 156 aa13.49□□□□□ -0.25
SHMT2-228ENST00000557302 SEPT6Q14141 434 aa13.49□□□□□ -0.25
SHMT2-228ENST00000557302 KCTD16Q68DU8 428 aa13.49□□□□□ -0.25
SHMT2-228ENST00000557302 OR4K2Q8NGD2 314 aa13.49□□□□□ -0.25
SHMT2-228ENST00000557302 OR4C6Q8NH72 309 aa13.49□□□□□ -0.25
SHMT2-228ENST00000557302 DTX3LQ8TDB6 740 aa13.49□□□□□ -0.25
SHMT2-228ENST00000557302 TRIM44Q96DX7 344 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-228ENST00000557302 DUSP23Q9BVJ7 150 aa13.49□□□□□ -0.25
SHMT2-228ENST00000557302 SUDS3Q9H7L9 328 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-228ENST00000557302 IL26Q9NPH9 171 aa13.49□□□□□ -0.25
SHMT2-228ENST00000557302 NLGN3Q9NZ94 848 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms