RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 GOLGA6CA6NDK9 693 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 GOLGA6BA6NDN3 693 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 FADS2P1A8MWK0 482 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 DDX3YO15523 660 aaKnown RBP10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 NOBOXO60393 691 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 PMPCBO75439 489 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 NDST3O95803 873 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 PIRTP0C851 137 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 GOLGA6DP0CG33 693 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 NFKB1P19838 968 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 RBL1P28749 1068 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 WNT3AP56704 352 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 KIF5AQ12840 1032 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 RTP5Q14D33 572 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 PCSK7Q16549 785 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 HENMT1Q5T8I9 393 aaKnown RBP10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 PID1Q7Z2X4 250 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 TAF8Q7Z7C8 310 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 TRIM74Q86UV6 250 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 C17orf82Q86X59 251 aaPredicted RBP10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 FAM46DQ8NEK8 389 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 NAT6Q93015 286 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 OXNAD1Q96HP4 312 aaPredicted RBP10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 FCRL5Q96RD9 977 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 VAT1Q99536 393 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 GORASP1Q9BQQ3 440 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 NRSN2Q9GZP1 204 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 FAM83DQ9H4H8 585 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 ZFYVE1Q9HBF4 777 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 SPATS2LQ9NUQ6 558 aaKnown RBP10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 TRNAU1APQ9NX07 287 aaKnown RBP10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 GOLGA6AQ9NYA3 693 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 UBP1Q9NZI7 540 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 SIRPGQ9P1W8 387 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 GULP1Q9UBP9 304 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 RABGEF1Q9UJ41 708 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 MOSPD1Q9UJG1 213 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 AMFRQ9UKV5 643 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 SHOC2Q9UQ13 582 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 PLEKHM1Q9Y4G2 1056 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 PCDHB1Q9Y5F3 818 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 SPO11Q9Y5K1 396 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 ADGRG1Q9Y653 693 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 PLXNB3Q9ULL4 1909 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 CELSR3Q9NYQ7 3312 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 H7C0C1 242 aa10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 NTN3O00634 580 aaPredicted RBP10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 AURKAO14965 403 aa10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 INPP4BO15327 924 aa10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 EPOP01588 193 aa10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 FGF1P05230 155 aa10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 PYGLP06737 847 aa10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 AK4P27144 223 aaPredicted RBP10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 ADCY8P40145 1251 aa10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 GNPDA1P46926 289 aa10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 ATP5OP48047 213 aa10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 OTUD4Q01804 1114 aaKnown RBP10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 HLTFQ14527 1009 aaKnown RBP eCLIP10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 ISXQ2M1V0 245 aa10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 PYCR3Q53H96 274 aa10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 DOK6Q6PKX4 331 aa10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 PEX26Q7Z412 305 aa10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 GPR26Q8NDV2 337 aa10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 CCHCR1Q8TD31 782 aa10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 CCDC74AQ96AQ1 378 aa10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 HIC2Q96JB3 615 aa10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 MRGPRX2Q96LB1 330 aa10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 FAM118BQ9BPY3 351 aa10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 CCDC3Q9BQI4 270 aa10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 ABCG4Q9H172 646 aa10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 SUDS3Q9H7L9 328 aaPredicted RBP10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 PKD2L2Q9NZM6 624 aa10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 KLHL8Q9P2G9 620 aaPredicted RBP10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 NFKBIL1Q9UBC1 381 aaPredicted RBP10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 TRHDEQ9UKU6 1024 aa10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 PACSIN2Q9UNF0 486 aaPredicted RBP10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 ZNF711Q9Y462 761 aa10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 PCYT1BQ9Y5K3 369 aaPredicted RBP10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 OAS3Q9Y6K5 1087 aaKnown RBP10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 CAPN6Q9Y6Q1 641 aa10.21□□□□□ -0.77
CCDC88C-206ENST00000553437 UNC79Q9P2D8 2635 aa10.2□□□□□ -0.78
CCDC88C-206ENST00000553437 A0A1W2PNU3 283 aaPredicted RBP10.2□□□□□ -0.78
CCDC88C-206ENST00000553437 A0A1W2PQM1 296 aa10.2□□□□□ -0.78
CCDC88C-206ENST00000553437 F5H423 210 aaPredicted RBP10.2□□□□□ -0.78
CCDC88C-206ENST00000553437 DNAJC6O75061 913 aa10.2□□□□□ -0.78
CCDC88C-206ENST00000553437 CSO75390 466 aaKnown RBP10.2□□□□□ -0.78
CCDC88C-206ENST00000553437 TJP3O95049 919 aa10.2□□□□□ -0.78
CCDC88C-206ENST00000553437 FTCDO95954 541 aa10.2□□□□□ -0.78
CCDC88C-206ENST00000553437 ATP1A1P05023 1023 aaKnown RBP10.2□□□□□ -0.78
CCDC88C-206ENST00000553437 GLB1P16278 677 aa10.2□□□□□ -0.78
CCDC88C-206ENST00000553437 PTPRBP23467 1997 aa10.2□□□□□ -0.78
CCDC88C-206ENST00000553437 CHRNA4P43681 627 aa10.2□□□□□ -0.78
CCDC88C-206ENST00000553437 GSDMDP57764 484 aa10.2□□□□□ -0.78
CCDC88C-206ENST00000553437 DCDC1P59894 354 aa10.2□□□□□ -0.78
CCDC88C-206ENST00000553437 EIF3EP60228 445 aaKnown RBP10.2□□□□□ -0.78
CCDC88C-206ENST00000553437 CTBSQ01459 385 aa10.2□□□□□ -0.78
CCDC88C-206ENST00000553437 ILF3Q12906 894 aaKnown RBP eCLIP10.2□□□□□ -0.78
CCDC88C-206ENST00000553437 KLF1Q13351 362 aaPredicted RBP10.2□□□□□ -0.78
CCDC88C-206ENST00000553437 LRRK1Q38SD2 2015 aa10.2□□□□□ -0.78
CCDC88C-206ENST00000553437 C14orf28Q4W4Y0 310 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms