RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 ARL4AP40617 200 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 PRKCIP41743 596 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 GPR3P46089 330 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 CDK3Q00526 305 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 B4GALNT1Q00973 533 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 DPTQ07507 201 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 DHX9Q08211 1270 aaKnown RBP7.61□□□□□ -1.19
NEK3-201ENST00000550331 ILF3Q12906 894 aaKnown RBP eCLIP7.61□□□□□ -1.19
NEK3-201ENST00000550331 TGIF1Q15583 401 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 CNGA3Q16281 694 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 ASIC2Q16515 512 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 LINC00303Q3SY05 128 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 MAP9Q49MG5 647 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 BOLA3Q53S33 107 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 MANEAQ5SRI9 462 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 TMEM164Q5U3C3 297 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 TMCO3Q6UWJ1 677 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 LINC00114Q6XXX2 140 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 USP53Q70EK8 1073 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 PIM3Q86V86 326 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 HEATR4Q86WZ0 1026 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 DTX1Q86Y01 620 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 SFTPA2Q8IWL1 248 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 TP53INP2Q8IXH6 220 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 CBARPQ8N350 705 aaPredicted RBP7.61□□□□□ -1.19
NEK3-201ENST00000550331 CCL4L1Q8NHW4 92 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 EXTL1Q92935 676 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 NSMCE3Q96MG7 304 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 MGME1Q9BQP7 344 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 FRMD8Q9BZ67 464 aaPredicted RBP7.61□□□□□ -1.19
NEK3-201ENST00000550331 TRIM7Q9C029 511 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 NAT10Q9H0A0 1025 aaKnown RBP7.61□□□□□ -1.19
NEK3-201ENST00000550331 HAUS4Q9H6D7 363 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 CARS2Q9HA77 564 aaKnown RBP7.61□□□□□ -1.19
NEK3-201ENST00000550331 STARD5Q9NSY2 213 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 AIPL1Q9NZN9 384 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 MOSPD1Q9UJG1 213 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 SLC17A4Q9Y2C5 497 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 PCDHB11Q9Y5F2 797 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 PCDHGC4Q9Y5F7 938 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 SPTBN1Q01082 2364 aaKnown RBP7.61□□□□□ -1.19
NEK3-201ENST00000550331 RELNP78509 3460 aa7.61□□□□□ -1.19
NEK3-201ENST00000550331 NPIPB15A6NHN6 443 aaPredicted RBP7.6□□□□□ -1.19
NEK3-201ENST00000550331 RHPN2P1A8MT19 583 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 GOLGA6L22H0YM25 854 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 GNB5O14775 395 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 B4GAT1O43505 415 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 MAFKO60675 156 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 PGLSO95336 258 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 FUCA1P04066 466 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 FGF1P05230 155 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 IVLP07476 585 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 CYP2A6P11509 494 aaPredicted RBP7.6□□□□□ -1.19
NEK3-201ENST00000550331 SFTPCP11686 197 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 SERPINB6P35237 376 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 ETV5P41161 510 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 ETV3P41162 512 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 CDH6P55285 790 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 MAZP56270 477 aaKnown RBP7.6□□□□□ -1.19
NEK3-201ENST00000550331 TRAF2Q12933 501 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 TRA2AQ13595 282 aaKnown RBP eCLIP7.6□□□□□ -1.19
NEK3-201ENST00000550331 UBAP2LQ14157 1087 aaKnown RBP7.6□□□□□ -1.19
NEK3-201ENST00000550331 C16orf72Q14CZ0 275 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 FILIP1LQ4L180 1135 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 CCDC183Q5T5S1 534 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 PHF19Q5T6S3 580 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 ARMC12Q5T9G4 340 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 MARC1Q5VT66 337 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 USP45Q70EL2 814 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 ZNF571Q7Z3V5 609 aaPredicted RBP7.6□□□□□ -1.19
NEK3-201ENST00000550331 TMPRSS9Q7Z410 1059 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 HSD11B1LQ7Z5J1 315 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 POLNQ7Z5Q5 900 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 NRROSQ86YC3 692 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 LRRC49Q8IUZ0 686 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 NDUFAF2Q8N183 169 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 PELI3Q8N2H9 469 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 PGBD5Q8N414 524 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 ATPAF2Q8N5M1 289 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 AOPEPQ8N6M6 819 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 ZDHHC1Q8WTX9 485 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 PDCD6IPQ8WUM4 868 aaKnown RBP7.6□□□□□ -1.19
NEK3-201ENST00000550331 NSMCE1Q8WV22 266 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 TEKT4Q8WW24 435 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 USP7Q93009 1102 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 GTPBP3Q969Y2 492 aaKnown RBP7.6□□□□□ -1.19
NEK3-201ENST00000550331 ZNF653Q96CK0 615 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 SCRN2Q96FV2 425 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 CSPG4P5Q96PW8 444 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 MCCC1Q96RQ3 725 aaPredicted RBP7.6□□□□□ -1.19
NEK3-201ENST00000550331 BPIFA3Q9BQP9 254 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 KRTAP4-9Q9BYQ8 210 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 CDH19Q9H159 772 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 ISCUQ9H1K1 167 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 SEMA6CQ9H3T2 930 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 RDH14Q9HBH5 336 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 NOD2Q9HC29 1040 aa7.6□□□□□ -1.19
NEK3-201ENST00000550331 STAU2Q9NUL3 570 aaKnown RBP eCLIP7.6□□□□□ -1.19
NEK3-201ENST00000550331 SPATS2LQ9NUQ6 558 aaKnown RBP7.6□□□□□ -1.19
NEK3-201ENST00000550331 FOXJ2Q9P0K8 574 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms