RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 JAZF1Q86VZ6 243 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 SYTL1Q8IYJ3 562 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 KCT2Q8NC54 265 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 MCFD2Q8NI22 146 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 ADAM32Q8TC27 787 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 UFD1Q92890 307 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 KLHL15Q96M94 604 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 RANBP3Q9H6Z4 567 aaPredicted RBP9.44□□□□□ -0.9
CLIP1-214ENST00000540539 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.44□□□□□ -0.9
CLIP1-214ENST00000540539 GRIP1Q9Y3R0 1128 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 FARP1Q9Y4F1 1045 aaPredicted RBP9.44□□□□□ -0.9
CLIP1-214ENST00000540539 CNTNAP2Q9UHC6 1331 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 USP17L12C9JPN9 530 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 USP17L21D6R901 530 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 EI24O14681 340 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 SNAPINO95295 136 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 CFBP00751 764 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 APOC1P02654 83 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 GLAP06280 429 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 TRIM49P0CI25 452 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 TRIM49CP0CI26 452 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 CD68P34810 354 aaPredicted RBP9.44□□□□□ -0.9
CLIP1-214ENST00000540539 NCS1P62166 190 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 PIGFQ07326 219 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 BMPR2Q13873 1038 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 CBX2Q14781 532 aaPredicted RBP9.44□□□□□ -0.9
CLIP1-214ENST00000540539 GPR68Q15743 365 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 CA9Q16790 459 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 TMEM119Q4V9L6 283 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 BCL7AQ4VC05 210 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 PDSS1Q5T2R2 415 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 ANGEL2Q5VTE6 544 aaKnown RBP9.44□□□□□ -0.9
CLIP1-214ENST00000540539 RANBP10Q6VN20 620 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 STRADAQ7RTN6 431 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 HDDC2Q7Z4H3 204 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 R3HCC1LQ7Z5L2 792 aaKnown RBP9.44□□□□□ -0.9
CLIP1-214ENST00000540539 GPAT4Q86UL3 456 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 LIX1LQ8IVB5 337 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 IGDCC3Q8IVU1 814 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 ADGRF2Q8IZF7 708 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 CAMKK1Q8N5S9 505 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 KDM1BQ8NB78 822 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 RP9Q8TA86 221 aaKnown RBP9.44□□□□□ -0.9
CLIP1-214ENST00000540539 NSUN6Q8TEA1 469 aaKnown RBP9.44□□□□□ -0.9
CLIP1-214ENST00000540539 TOP1MTQ969P6 601 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 SIPA1Q96FS4 1042 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 AHCYL2Q96HN2 611 aaKnown RBP9.44□□□□□ -0.9
CLIP1-214ENST00000540539 NEDD4LQ96PU5 975 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 CATSPERBQ9H7T0 1116 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 DDX4Q9NQI0 724 aaKnown RBP9.44□□□□□ -0.9
CLIP1-214ENST00000540539 ZNF70Q9UC06 446 aaPredicted RBP9.44□□□□□ -0.9
CLIP1-214ENST00000540539 NUFIP1Q9UHK0 495 aaKnown RBP9.44□□□□□ -0.9
CLIP1-214ENST00000540539 OAZ3Q9UMX2 235 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 CYP2D7A0A087X1C5 515 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 MINDY4BA8MYZ0 360 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 E5RI56 91 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 E7ESA3 106 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 SLC22A2O15244 555 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 OR2B3O76000 313 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 RASAL1O95294 804 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 C7P10643 843 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 SLC2A3P11169 496 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 SFTPCP11686 197 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 RAB3AP20336 220 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 CRHBPP24387 322 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 GNPDA1P46926 289 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 MAP2K6P52564 334 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 ARFIP1P53367 373 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 MPP1Q00013 466 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 ALDH6A1Q02252 535 aaKnown RBP9.43□□□□□ -0.9
CLIP1-214ENST00000540539 TNK1Q13470 666 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 STARD3Q14849 445 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 SKIV2LQ15477 1246 aaKnown RBP9.43□□□□□ -0.9
CLIP1-214ENST00000540539 ATP6AP1Q15904 470 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 ECM1Q16610 540 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 AANATQ16613 207 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 FAM180BQ6P0A1 224 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 PNCKQ6P2M8 343 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 EFL1Q7Z2Z2 1120 aaKnown RBP9.43□□□□□ -0.9
CLIP1-214ENST00000540539 NRARPQ7Z6K4 114 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 MAPK15Q8TD08 544 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.43□□□□□ -0.9
CLIP1-214ENST00000540539 CANT1Q8WVQ1 401 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 PBXIP1Q96AQ6 731 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 CNDP1Q96KN2 507 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 BCL7BQ9BQE9 202 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 COG4Q9H9E3 785 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 PCDHB16Q9NRJ7 776 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 SMPD3Q9NY59 655 aaPredicted RBP9.43□□□□□ -0.9
CLIP1-214ENST00000540539 APEX2Q9UBZ4 518 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 MEIOCA2RUB1 952 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 NRP2O60462 931 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 SLC22A5O76082 557 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 KRT19P08727 400 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 ADORA3P0DMS8 318 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 SRCP12931 536 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 SHMT2P34897 504 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 MTHFRP42898 656 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 GZMKP49863 264 aa9.43□□□□□ -0.9
CLIP1-214ENST00000540539 CPT1AP50416 773 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms