RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 SLC25A51Q9H1U9 297 aa11.95□□□□□ -0.5
CLIP1-208ENST00000537004 C6orf106Q9H6K1 298 aaPredicted RBP11.95□□□□□ -0.5
CLIP1-208ENST00000537004 C20orf96Q9NUD7 363 aaPredicted RBP11.95□□□□□ -0.5
CLIP1-208ENST00000537004 SARDHQ9UL12 918 aa11.95□□□□□ -0.5
CLIP1-208ENST00000537004 EDDM13A0A1B0GTR0 161 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 CBX4O00257 560 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 TPP1O14773 563 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 KHNYNO15037 678 aaKnown RBP11.94□□□□□ -0.5
CLIP1-208ENST00000537004 IGLV3-19P01714 112 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 ACVRL1P37023 503 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 NNMTP40261 264 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 PSMD8P48556 350 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 LIG3P49916 1009 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 YBEYP58557 167 aaPredicted RBP11.94□□□□□ -0.5
CLIP1-208ENST00000537004 PDE1BQ01064 536 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 SULT2A1Q06520 285 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 PUM1Q14671 1186 aaKnown RBP eCLIP11.94□□□□□ -0.5
CLIP1-208ENST00000537004 POU6F1Q14863 301 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 CST6Q15828 149 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 HSP90AA5PQ58FG0 334 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 PCID2Q5JVF3 399 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 TEDDM1Q5T9Z0 273 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 STPG1Q5TH74 334 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 RANBP10Q6VN20 620 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 STRA8Q7Z7C7 330 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 PACS2Q86VP3 889 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 OR2I1PQ8NGU4 316 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 NSMCE1Q8WV22 266 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 IMP4Q96G21 291 aaKnown RBP11.94□□□□□ -0.5
CLIP1-208ENST00000537004 ZNF778Q96MU6 729 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 AGAP2Q99490 1192 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 RBBP8Q99708 897 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 MIR1-1HGQ9H1L0 117 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 ABCF3Q9NUQ8 709 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 FBXL12Q9NXK8 326 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 KLHL14Q9P2G3 628 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 CACNA1EQ15878 2313 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 CCDC78A2IDD5 438 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 IL1BP01584 269 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 NEFHP12036 1026 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 SRCP12931 536 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 SLC8A1P32418 973 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 OXCT1P55809 520 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 WNT3AP56704 352 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 MAXP61244 160 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 IL10RBQ08334 325 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 ITKQ08881 620 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 PCSK7Q16549 785 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 LACTB2Q53H82 288 aaPredicted RBP11.94□□□□□ -0.5
CLIP1-208ENST00000537004 KDELC1Q6UW63 502 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 DGLUCYQ7Z3D6 616 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 KDELC2Q7Z4H8 507 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 AADATQ8N5Z0 425 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 TEX26Q8N6G2 289 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 ARMC2Q8NEN0 867 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 NETO1Q8TDF5 533 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 THOC1Q96FV9 657 aaKnown RBP11.94□□□□□ -0.5
CLIP1-208ENST00000537004 C2orf49Q9BVC5 232 aaPredicted RBP11.94□□□□□ -0.5
CLIP1-208ENST00000537004 TNKS2Q9H2K2 1166 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 SLC25A13Q9UJS0 675 aa11.94□□□□□ -0.5
CLIP1-208ENST00000537004 PI4KAP42356 2102 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 C4orf47A7E2U8 309 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 MEI4A8MW99 385 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 CDX4O14627 284 aaPredicted RBP11.93□□□□□ -0.5
CLIP1-208ENST00000537004 RNASEH1O60930 286 aaKnown RBP11.93□□□□□ -0.5
CLIP1-208ENST00000537004 RNASEH2AO75792 299 aaKnown RBP11.93□□□□□ -0.5
CLIP1-208ENST00000537004 FSBPO95073 299 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 TOP3BO95985 862 aaKnown RBP11.93□□□□□ -0.5
CLIP1-208ENST00000537004 C7P10643 843 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 BGNP21810 368 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 OXTRP30559 389 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 SPRP35270 261 aaPredicted RBP11.93□□□□□ -0.5
CLIP1-208ENST00000537004 CD86P42081 329 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 MAPK8P45983 427 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 LIMK2P53671 638 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 DSC2Q02487 901 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 GNA12Q03113 381 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 PDE1CQ14123 709 aaPredicted RBP11.93□□□□□ -0.5
CLIP1-208ENST00000537004 ELAVL3Q14576 367 aaKnown RBP11.93□□□□□ -0.5
CLIP1-208ENST00000537004 PDPK2PQ6A1A2 396 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 DCAF4L2Q8NA75 395 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 PPHLN1Q8NEY8 458 aaKnown RBP11.93□□□□□ -0.5
CLIP1-208ENST00000537004 SNX19Q92543 992 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 RMDN2Q96LZ7 410 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 MYCBPQ99417 103 aaPredicted RBP11.93□□□□□ -0.5
CLIP1-208ENST00000537004 BTBD1Q9H0C5 482 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 ATP13A1Q9HD20 1204 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 IARS2Q9NSE4 1012 aaKnown RBP11.93□□□□□ -0.5
CLIP1-208ENST00000537004 EIF2B4Q9UI10 523 aaKnown RBP11.93□□□□□ -0.5
CLIP1-208ENST00000537004 GGT7Q9UJ14 662 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 HS3ST2Q9Y278 367 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 ILVBLA1L0T0 632 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 METTL12A8MUP2 240 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 GOLGA8TH3BQL2 631 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 SLC30A4O14863 429 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 PRAMEF11O60813 436 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 ZMPSTE24O75844 475 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 SEMA4FO95754 770 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 MMP2P08253 660 aa11.93□□□□□ -0.5
CLIP1-208ENST00000537004 F7P08709 466 aaPredicted RBP11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms