RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 JAKMIP3Q5VZ66 844 aa3.59□□□□□ -1.83
USP48-215ENST00000534705 ATG16L1Q676U5 607 aa3.59□□□□□ -1.83
USP48-215ENST00000534705 ZNF324BQ6AW86 544 aaPredicted RBP3.59□□□□□ -1.83
USP48-215ENST00000534705 NADSYN1Q6IA69 706 aa3.59□□□□□ -1.83
USP48-215ENST00000534705 PRR5LQ6MZQ0 368 aa3.59□□□□□ -1.83
USP48-215ENST00000534705 RETSATQ6NUM9 610 aa3.59□□□□□ -1.83
USP48-215ENST00000534705 NEK10Q6ZWH5 1172 aa3.59□□□□□ -1.83
USP48-215ENST00000534705 CPOQ8IVL8 374 aa3.59□□□□□ -1.83
USP48-215ENST00000534705 CPXM2Q8N436 756 aa3.59□□□□□ -1.83
USP48-215ENST00000534705 NOC3LQ8WTT2 800 aaKnown RBP3.59□□□□□ -1.83
USP48-215ENST00000534705 TBATAQ96M53 351 aa3.59□□□□□ -1.83
USP48-215ENST00000534705 PHF7Q9BWX1 381 aaPredicted RBP3.59□□□□□ -1.83
USP48-215ENST00000534705 TM6SF1Q9BZW5 370 aa3.59□□□□□ -1.83
USP48-215ENST00000534705 NPFFR1Q9GZQ6 430 aa3.59□□□□□ -1.83
USP48-215ENST00000534705 CDT1Q9H211 546 aa3.59□□□□□ -1.83
USP48-215ENST00000534705 MROH8Q9H579 483 aa3.59□□□□□ -1.83
USP48-215ENST00000534705 RIC8AQ9NPQ8 531 aa3.59□□□□□ -1.83
USP48-215ENST00000534705 TMEM160Q9NX00 188 aa3.59□□□□□ -1.83
USP48-215ENST00000534705 TSPYL4Q9UJ04 414 aa3.59□□□□□ -1.83
USP48-215ENST00000534705 ERRFI1Q9UJM3 462 aaPredicted RBP3.59□□□□□ -1.83
USP48-215ENST00000534705 ABCC12Q96J65 1359 aa3.59□□□□□ -1.83
USP48-215ENST00000534705 A0A0G2JLW4 131 aa3.58□□□□□ -1.84
USP48-215ENST00000534705 EIF3FO00303 357 aaPredicted RBP3.58□□□□□ -1.84
USP48-215ENST00000534705 WNT9BO14905 357 aa3.58□□□□□ -1.84
USP48-215ENST00000534705 EPB41L2O43491 1005 aaKnown RBP3.58□□□□□ -1.84
USP48-215ENST00000534705 ITM2AO43736 263 aa3.58□□□□□ -1.84
USP48-215ENST00000534705 CEP104O60308 925 aa3.58□□□□□ -1.84
USP48-215ENST00000534705 LETM1O95202 739 aaPredicted RBP3.58□□□□□ -1.84
USP48-215ENST00000534705 SERPINB2P05120 415 aa3.58□□□□□ -1.84
USP48-215ENST00000534705 FCGR1AP12314 374 aa3.58□□□□□ -1.84
USP48-215ENST00000534705 PLA2G2AP14555 144 aa3.58□□□□□ -1.84
USP48-215ENST00000534705 ZNF8P17098 575 aaPredicted RBP3.58□□□□□ -1.84
USP48-215ENST00000534705 CALRP27797 417 aaKnown RBP3.58□□□□□ -1.84
USP48-215ENST00000534705 TNFRSF8P28908 595 aa3.58□□□□□ -1.84
USP48-215ENST00000534705 RYKP34925 604 aa3.58□□□□□ -1.84
USP48-215ENST00000534705 LIFRP42702 1097 aa3.58□□□□□ -1.84
USP48-215ENST00000534705 CCR5P51681 352 aa3.58□□□□□ -1.84
USP48-215ENST00000534705 PRELPP51888 382 aa3.58□□□□□ -1.84
USP48-215ENST00000534705 YWHAZP63104 245 aaKnown RBP3.58□□□□□ -1.84
USP48-215ENST00000534705 ECT2LQ008S8 904 aa3.58□□□□□ -1.84
USP48-215ENST00000534705 SIM2Q14190 667 aaPredicted RBP3.58□□□□□ -1.84
USP48-215ENST00000534705 CYP26C1Q6V0L0 522 aa3.58□□□□□ -1.84
USP48-215ENST00000534705 LRRC8DQ7L1W4 858 aa3.58□□□□□ -1.84
USP48-215ENST00000534705 ZNF34Q8IZ26 560 aa3.58□□□□□ -1.84
USP48-215ENST00000534705 TSPYL6Q8N831 410 aa3.58□□□□□ -1.84
USP48-215ENST00000534705 TNIP2Q8NFZ5 429 aa3.58□□□□□ -1.84
USP48-215ENST00000534705 NEUROD6Q96NK8 337 aa3.58□□□□□ -1.84
USP48-215ENST00000534705 MMTAG2Q9BU76 263 aaKnown RBP3.58□□□□□ -1.84
USP48-215ENST00000534705 CLK4Q9HAZ1 481 aaKnown RBP3.58□□□□□ -1.84
USP48-215ENST00000534705 C9orf78Q9NZ63 289 aaPredicted RBP3.58□□□□□ -1.84
USP48-215ENST00000534705 MAP3K15Q6ZN16 1313 aa3.58□□□□□ -1.84
USP48-215ENST00000534705 UBN2Q6ZU65 1347 aa3.58□□□□□ -1.84
USP48-215ENST00000534705 IBTKQ9P2D0 1353 aaPredicted RBP3.58□□□□□ -1.84
USP48-215ENST00000534705 A0A0U1RQJ8 604 aa3.57□□□□□ -1.84
USP48-215ENST00000534705 GAGE10A6NGK3 116 aa3.57□□□□□ -1.84
USP48-215ENST00000534705 KDM4EB2RXH2 506 aaPredicted RBP3.57□□□□□ -1.84
USP48-215ENST00000534705 ERVV-1B6SEH8 477 aa3.57□□□□□ -1.84
USP48-215ENST00000534705 KCNJ13O60928 360 aa3.57□□□□□ -1.84
USP48-215ENST00000534705 HOXB7P09629 217 aa3.57□□□□□ -1.84
USP48-215ENST00000534705 MYH7P12883 1935 aa3.57□□□□□ -1.84
USP48-215ENST00000534705 MYL6BP14649 208 aa3.57□□□□□ -1.84
USP48-215ENST00000534705 CD72P21854 359 aa3.57□□□□□ -1.84
USP48-215ENST00000534705 CHATP28329 748 aa3.57□□□□□ -1.84
USP48-215ENST00000534705 C21orf33P30042 268 aaPredicted RBP3.57□□□□□ -1.84
USP48-215ENST00000534705 MXI1P50539 228 aa3.57□□□□□ -1.84
USP48-215ENST00000534705 ART1P52961 327 aa3.57□□□□□ -1.84
USP48-215ENST00000534705 KIF5AQ12840 1032 aa3.57□□□□□ -1.84
USP48-215ENST00000534705 IL16Q14005 1332 aa3.57□□□□□ -1.84
USP48-215ENST00000534705 CTTNQ14247 550 aaKnown RBP3.57□□□□□ -1.84
USP48-215ENST00000534705 MYBPC2Q14324 1141 aa3.57□□□□□ -1.84
USP48-215ENST00000534705 NAA25Q14CX7 972 aa3.57□□□□□ -1.84
USP48-215ENST00000534705 TAF12Q16514 161 aa3.57□□□□□ -1.84
USP48-215ENST00000534705 EDRF1Q3B7T1 1238 aa3.57□□□□□ -1.84
USP48-215ENST00000534705 FBXO43Q4G163 708 aa3.57□□□□□ -1.84
USP48-215ENST00000534705 CEP350Q5VT06 3117 aa3.57□□□□□ -1.84
USP48-215ENST00000534705 CAPRIN2Q6IMN6 1127 aaKnown RBP3.57□□□□□ -1.84
USP48-215ENST00000534705 KLHL24Q6TFL4 600 aa3.57□□□□□ -1.84
USP48-215ENST00000534705 MON1AQ86VX9 555 aa3.57□□□□□ -1.84
USP48-215ENST00000534705 MIGA1Q8NAN2 632 aa3.57□□□□□ -1.84
USP48-215ENST00000534705 GDPD5Q8WTR4 605 aa3.57□□□□□ -1.84
USP48-215ENST00000534705 NUDCD2Q8WVJ2 157 aa3.57□□□□□ -1.84
USP48-215ENST00000534705 USP13Q92995 863 aaPredicted RBP3.57□□□□□ -1.84
USP48-215ENST00000534705 SECISBP2LQ93073 1101 aaKnown RBP3.57□□□□□ -1.84
USP48-215ENST00000534705 UBXN10Q96LJ8 280 aa3.57□□□□□ -1.84
USP48-215ENST00000534705 SLC25A33Q9BSK2 321 aa3.57□□□□□ -1.84
USP48-215ENST00000534705 YY1AP1Q9H869 796 aa3.57□□□□□ -1.84
USP48-215ENST00000534705 BEX4Q9NWD9 120 aaPredicted RBP3.57□□□□□ -1.84
USP48-215ENST00000534705 HCN3Q9P1Z3 774 aa3.57□□□□□ -1.84
USP48-215ENST00000534705 POLG2Q9UHN1 485 aa3.57□□□□□ -1.84
USP48-215ENST00000534705 AKAP11Q9UKA4 1901 aa3.57□□□□□ -1.84
USP48-215ENST00000534705 GJD2Q9UKL4 321 aa3.57□□□□□ -1.84
USP48-215ENST00000534705 MYH2Q9UKX2 1941 aa3.56□□□□□ -1.84
USP48-215ENST00000534705 IGLV5-52A0A0A0MRZ9 124 aa3.56□□□□□ -1.84
USP48-215ENST00000534705 A0A1B0GVM2 712 aa3.56□□□□□ -1.84
USP48-215ENST00000534705 DYTNA2CJ06 578 aa3.56□□□□□ -1.84
USP48-215ENST00000534705 DYNC1I1O14576 645 aa3.56□□□□□ -1.84
USP48-215ENST00000534705 SERPINI2O75830 405 aa3.56□□□□□ -1.84
USP48-215ENST00000534705 VDRP11473 427 aa3.56□□□□□ -1.84
USP48-215ENST00000534705 PCNAP12004 261 aa3.56□□□□□ -1.84
USP48-215ENST00000534705 EIF2S2P20042 333 aaKnown RBP3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms