RNA–Protein interactions for RNA: ENST00000533961.1

RDX-215, Transcript of radixin, human

TSL 2

Gene RDX, Length 771 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RDX-215	ENST00000533961	BUB3	O43684	328 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	PTP4A3	O75365	173 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	DDN	O94850	711 aa	Predicted RBP	3.38	□□□□□ -1.87
RDX-215	ENST00000533961	HSPA1A	P0DMV8	641 aa	Known RBP	3.38	□□□□□ -1.87
RDX-215	ENST00000533961	HSPA1B	P0DMV9	641 aa	Known RBP	3.38	□□□□□ -1.87
RDX-215	ENST00000533961	DDX5	P17844	614 aa	Known RBP	3.38	□□□□□ -1.87
RDX-215	ENST00000533961	PPARG	P37231	505 aa	Predicted RBP	3.38	□□□□□ -1.87
RDX-215	ENST00000533961	GALC	P54803	685 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	ISL1	P61371	349 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	PSMC6	P62333	389 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	RPL7A	P62424	266 aa	Known RBP	3.38	□□□□□ -1.87
RDX-215	ENST00000533961	DLG1	Q12959	904 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	NEDD9	Q14511	834 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	DPCR1	Q3MIW9	517 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	RGMB	Q6NW40	437 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	DUS1L	Q6P1R4	473 aa	Known RBP	3.38	□□□□□ -1.87
RDX-215	ENST00000533961	UNQ6126/PRO20091	Q6UXV3	157 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	KRTAP5-2	Q701N4	177 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	SATL1	Q86VE3	508 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	TTC39C	Q8N584	583 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	ZNF441	Q8N8Z8	693 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	HJURP	Q8NCD3	748 aa	Predicted RBP	3.38	□□□□□ -1.87
RDX-215	ENST00000533961	BBS10	Q8TAM1	723 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	NEK9	Q8TD19	979 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	SLC44A1	Q8WWI5	657 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	USP6NL	Q92738	828 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	RRNAD1	Q96FB5	475 aa	Known RBP	3.38	□□□□□ -1.87
RDX-215	ENST00000533961	FEM1C	Q96JP0	617 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	C1orf74	Q96LT6	269 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	IL17F	Q96PD4	163 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	INPP4A	Q96PE3	977 aa	Predicted RBP	3.38	□□□□□ -1.87
RDX-215	ENST00000533961	PCGF1	Q9BSM1	259 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	CENPO	Q9BU64	300 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	MAF1	Q9H063	256 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	UNC45A	Q9H3U1	944 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	UBTD1	Q9HAC8	227 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	EBF2	Q9HAK2	575 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	ASAH2	Q9NR71	780 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	SETD4	Q9NVD3	440 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	C1RL	Q9NZP8	487 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	COPG2	Q9UBF2	871 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	ERVK-11	Q9UQG0	969 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	CLIC4	Q9Y696	253 aa		3.38	□□□□□ -1.87
RDX-215	ENST00000533961	PDS5A	Q29RF7	1337 aa	Known RBP	3.38	□□□□□ -1.87
RDX-215	ENST00000533961	SAA2-SAA4	A0A096LPE2	208 aa		3.37	□□□□□ -1.87
RDX-215	ENST00000533961	LIPT2	A6NK58	231 aa		3.37	□□□□□ -1.87
RDX-215	ENST00000533961	AP3D1	O14617	1153 aa		3.37	□□□□□ -1.87
RDX-215	ENST00000533961	ATP2A1	O14983	1001 aa		3.37	□□□□□ -1.87
RDX-215	ENST00000533961	MID1	O15344	667 aa		3.37	□□□□□ -1.87
RDX-215	ENST00000533961	BAIAP3	O94812	1187 aa		3.37	□□□□□ -1.87
RDX-215	ENST00000533961	TUBB	P07437	444 aa		3.37	□□□□□ -1.87
RDX-215	ENST00000533961	CLTB	P09497	229 aa		3.37	□□□□□ -1.87
RDX-215	ENST00000533961	ITGA2	P17301	1181 aa		3.37	□□□□□ -1.87
RDX-215	ENST00000533961	MCM3	P25205	808 aa		3.37	□□□□□ -1.87
RDX-215	ENST00000533961	BDKRB2	P30411	391 aa		3.37	□□□□□ -1.87
RDX-215	ENST00000533961	STX2	P32856	288 aa		3.37	□□□□□ -1.87
RDX-215	ENST00000533961	BSG	P35613	385 aa		3.37	□□□□□ -1.87
RDX-215	ENST00000533961	GARS	P41250	739 aa	Known RBP	3.37	□□□□□ -1.87
RDX-215	ENST00000533961	SLC20A2	Q08357	652 aa		3.37	□□□□□ -1.87
RDX-215	ENST00000533961	CTF1	Q16619	201 aa		3.37	□□□□□ -1.87
RDX-215	ENST00000533961	KRT24	Q2M2I5	525 aa		3.37	□□□□□ -1.87
RDX-215	ENST00000533961	AMZ1	Q400G9	498 aa		3.37	□□□□□ -1.87
RDX-215	ENST00000533961	KCNT1	Q5JUK3	1230 aa		3.37	□□□□□ -1.87
RDX-215	ENST00000533961	STXBP5	Q5T5C0	1151 aa		3.37	□□□□□ -1.87
RDX-215	ENST00000533961	DPPA4	Q7L190	304 aa		3.37	□□□□□ -1.87
RDX-215	ENST00000533961	TAOK1	Q7L7X3	1001 aa		3.37	□□□□□ -1.87
RDX-215	ENST00000533961	SDCCAG8	Q86SQ7	713 aa	Predicted RBP	3.37	□□□□□ -1.87
RDX-215	ENST00000533961	WDR63	Q8IWG1	891 aa		3.37	□□□□□ -1.87
RDX-215	ENST00000533961	BEST3	Q8N1M1	668 aa		3.37	□□□□□ -1.87
RDX-215	ENST00000533961	NGEF	Q8N5V2	710 aa		3.37	□□□□□ -1.87
RDX-215	ENST00000533961	KBTBD3	Q8NAB2	608 aa		3.37	□□□□□ -1.87
RDX-215	ENST00000533961	KCNH5	Q8NCM2	988 aa		3.37	□□□□□ -1.87
RDX-215	ENST00000533961	SLC20A1	Q8WUM9	679 aa		3.37	□□□□□ -1.87
RDX-215	ENST00000533961	ACOX2	Q99424	681 aa		3.37	□□□□□ -1.87
RDX-215	ENST00000533961	FAM110A	Q9BQ89	295 aa		3.37	□□□□□ -1.87
RDX-215	ENST00000533961	TMEM47	Q9BQJ4	181 aa		3.37	□□□□□ -1.87
RDX-215	ENST00000533961	DIAPH3	Q9NSV4	1193 aa		3.37	□□□□□ -1.87
RDX-215	ENST00000533961	B3GALT5	Q9Y2C3	310 aa		3.37	□□□□□ -1.87
RDX-215	ENST00000533961		A0A087X0M5	115 aa		3.36	□□□□□ -1.87
RDX-215	ENST00000533961		A0A1B0GX30	115 aa		3.36	□□□□□ -1.87
RDX-215	ENST00000533961	FRMD3	A2A2Y4	597 aa		3.36	□□□□□ -1.87
RDX-215	ENST00000533961	GOLGA6L9	A6NEM1	432 aa		3.36	□□□□□ -1.87
RDX-215	ENST00000533961	PLPP2	O43688	288 aa		3.36	□□□□□ -1.87
RDX-215	ENST00000533961	EIF2S1	P05198	315 aa	Known RBP	3.36	□□□□□ -1.87
RDX-215	ENST00000533961	SRC	P12931	536 aa		3.36	□□□□□ -1.87
RDX-215	ENST00000533961	ZNF182	P17025	639 aa	Predicted RBP	3.36	□□□□□ -1.87
RDX-215	ENST00000533961	MAOA	P21397	527 aa		3.36	□□□□□ -1.87
RDX-215	ENST00000533961	CORO1A	P31146	461 aa	Known RBP	3.36	□□□□□ -1.87
RDX-215	ENST00000533961	RXRG	P48443	463 aa		3.36	□□□□□ -1.87
RDX-215	ENST00000533961	NLRP5	P59047	1200 aa		3.36	□□□□□ -1.87
RDX-215	ENST00000533961	CSTF3	Q12996	717 aa	Known RBP	3.36	□□□□□ -1.87
RDX-215	ENST00000533961	TNFAIP1	Q13829	316 aa		3.36	□□□□□ -1.87
RDX-215	ENST00000533961	ASTE1	Q2TB18	679 aa	Predicted RBP	3.36	□□□□□ -1.87
RDX-215	ENST00000533961	KLHL35	Q6PF15	583 aa		3.36	□□□□□ -1.87
RDX-215	ENST00000533961	TUBA1A	Q71U36	451 aa		3.36	□□□□□ -1.87
RDX-215	ENST00000533961	MUC20	Q8N307	709 aa	Predicted RBP	3.36	□□□□□ -1.87
RDX-215	ENST00000533961	PCDH20	Q8N6Y1	951 aa	Known RBP	3.36	□□□□□ -1.87
RDX-215	ENST00000533961	LMNTD1	Q8N9Z9	388 aa		3.36	□□□□□ -1.87
RDX-215	ENST00000533961	APBB2	Q92870	758 aa		3.36	□□□□□ -1.87
RDX-215	ENST00000533961	CMTM3	Q96MX0	182 aa		3.36	□□□□□ -1.87

Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms