RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 USP27XA6NNY8 438 aa12.9□□□□□ -0.34
VPS28-216ENST00000533806 TNFP01375 233 aa12.9□□□□□ -0.34
VPS28-216ENST00000533806 FGGP02679 453 aa12.9□□□□□ -0.34
VPS28-216ENST00000533806 IVLP07476 585 aa12.9□□□□□ -0.34
VPS28-216ENST00000533806 DEFB133Q30KQ1 61 aa12.9□□□□□ -0.34
VPS28-216ENST00000533806 P3H1Q32P28 736 aa12.9□□□□□ -0.34
VPS28-216ENST00000533806 ZCCHC8Q6NZY4 707 aaKnown RBP12.9□□□□□ -0.34
VPS28-216ENST00000533806 NRROSQ86YC3 692 aa12.9□□□□□ -0.34
VPS28-216ENST00000533806 CHCHD4Q8N4Q1 142 aa12.9□□□□□ -0.34
VPS28-216ENST00000533806 GPBAR1Q8TDU6 330 aa12.9□□□□□ -0.34
VPS28-216ENST00000533806 APOLD1Q96LR9 279 aa12.9□□□□□ -0.34
VPS28-216ENST00000533806 PLEKHG4BQ96PX9 1271 aa12.9□□□□□ -0.34
VPS28-216ENST00000533806 FICDQ9BVA6 458 aa12.9□□□□□ -0.34
VPS28-216ENST00000533806 GPR63Q9BZJ6 419 aa12.9□□□□□ -0.34
VPS28-216ENST00000533806 TMEM168Q9H0V1 697 aa12.9□□□□□ -0.34
VPS28-216ENST00000533806 IL26Q9NPH9 171 aa12.9□□□□□ -0.34
VPS28-216ENST00000533806 RAD18Q9NS91 495 aa12.9□□□□□ -0.34
VPS28-216ENST00000533806 TMPRSS11EQ9UL52 423 aa12.9□□□□□ -0.34
VPS28-216ENST00000533806 TTC7AQ9ULT0 858 aaPredicted RBP12.9□□□□□ -0.34
VPS28-216ENST00000533806 DRG1Q9Y295 367 aaKnown RBP12.9□□□□□ -0.34
VPS28-216ENST00000533806 GAPDHSO14556 408 aaPredicted RBP12.89□□□□□ -0.35
VPS28-216ENST00000533806 HYAL3O43820 417 aaPredicted RBP12.89□□□□□ -0.35
VPS28-216ENST00000533806 DNAJC6O75061 913 aa12.89□□□□□ -0.35
VPS28-216ENST00000533806 ALPPL2P10696 532 aa12.89□□□□□ -0.35
VPS28-216ENST00000533806 POLD2P49005 469 aa12.89□□□□□ -0.35
VPS28-216ENST00000533806 FOXC1Q12948 553 aa12.89□□□□□ -0.35
VPS28-216ENST00000533806 ILKQ13418 452 aa12.89□□□□□ -0.35
VPS28-216ENST00000533806 PRPSAP1Q14558 356 aa12.89□□□□□ -0.35
VPS28-216ENST00000533806 ELOCQ15369 112 aa12.89□□□□□ -0.35
VPS28-216ENST00000533806 SMAD1Q15797 465 aaKnown RBP12.89□□□□□ -0.35
VPS28-216ENST00000533806 C6orf132Q5T0Z8 1188 aa12.89□□□□□ -0.35
VPS28-216ENST00000533806 PDPK2PQ6A1A2 396 aa12.89□□□□□ -0.35
VPS28-216ENST00000533806 OGFOD3Q6PK18 319 aa12.89□□□□□ -0.35
VPS28-216ENST00000533806 ARHGEF18Q6ZSZ5 1173 aa12.89□□□□□ -0.35
VPS28-216ENST00000533806 RD3Q7Z3Z2 195 aa12.89□□□□□ -0.35
VPS28-216ENST00000533806 TRIM74Q86UV6 250 aa12.89□□□□□ -0.35
VPS28-216ENST00000533806 SLC35F6Q8N357 371 aa12.89□□□□□ -0.35
VPS28-216ENST00000533806 TRAM1L1Q8N609 369 aa12.89□□□□□ -0.35
VPS28-216ENST00000533806 PRELID2Q8N945 189 aa12.89□□□□□ -0.35
VPS28-216ENST00000533806 GLIS1Q8NBF1 620 aa12.89□□□□□ -0.35
VPS28-216ENST00000533806 CCL4L1Q8NHW4 92 aa12.89□□□□□ -0.35
VPS28-216ENST00000533806 C19orf43Q9BQ61 176 aa12.89□□□□□ -0.35
VPS28-216ENST00000533806 APOL2Q9BQE5 337 aa12.89□□□□□ -0.35
VPS28-216ENST00000533806 ZSCAN5AQ9BUG6 496 aa12.89□□□□□ -0.35
VPS28-216ENST00000533806 FSD1LQ9BXM9 530 aa12.89□□□□□ -0.35
VPS28-216ENST00000533806 CYP4F12Q9HCS2 524 aa12.89□□□□□ -0.35
VPS28-216ENST00000533806 TRNAU1APQ9NX07 287 aaKnown RBP12.89□□□□□ -0.35
VPS28-216ENST00000533806 TRMT1Q9NXH9 659 aaKnown RBP12.89□□□□□ -0.35
VPS28-216ENST00000533806 VPS18Q9P253 973 aa12.89□□□□□ -0.35
VPS28-216ENST00000533806 ANGPTL2Q9UKU9 493 aa12.89□□□□□ -0.35
VPS28-216ENST00000533806 PYCARDQ9ULZ3 195 aa12.89□□□□□ -0.35
VPS28-216ENST00000533806 SUFUQ9UMX1 484 aa12.89□□□□□ -0.35
VPS28-216ENST00000533806 TMEM98Q9Y2Y6 226 aa12.89□□□□□ -0.35
VPS28-216ENST00000533806 PCYT1BQ9Y5K3 369 aaPredicted RBP12.89□□□□□ -0.35
VPS28-216ENST00000533806 OAS3Q9Y6K5 1087 aaKnown RBP12.89□□□□□ -0.35
VPS28-216ENST00000533806 EME2A4GXA9 379 aaPredicted RBP12.88□□□□□ -0.35
VPS28-216ENST00000533806 CEP104O60308 925 aa12.88□□□□□ -0.35
VPS28-216ENST00000533806 USP12O75317 370 aa12.88□□□□□ -0.35
VPS28-216ENST00000533806 PPFIA2O75334 1257 aa12.88□□□□□ -0.35
VPS28-216ENST00000533806 AP2A1O95782 977 aa12.88□□□□□ -0.35
VPS28-216ENST00000533806 ATP1A1P05023 1023 aaKnown RBP12.88□□□□□ -0.35
VPS28-216ENST00000533806 ANXA6P08133 673 aa12.88□□□□□ -0.35
VPS28-216ENST00000533806 CDK4P11802 303 aa12.88□□□□□ -0.35
VPS28-216ENST00000533806 MYF5P13349 255 aa12.88□□□□□ -0.35
VPS28-216ENST00000533806 SPINK2P20155 84 aa12.88□□□□□ -0.35
VPS28-216ENST00000533806 SNX1Q13596 522 aa12.88□□□□□ -0.35
VPS28-216ENST00000533806 SPARCL1Q14515 664 aa12.88□□□□□ -0.35
VPS28-216ENST00000533806 PYCR3Q53H96 274 aa12.88□□□□□ -0.35
VPS28-216ENST00000533806 ZNF569Q5MCW4 686 aa12.88□□□□□ -0.35
VPS28-216ENST00000533806 TMPRSS7Q7RTY8 843 aa12.88□□□□□ -0.35
VPS28-216ENST00000533806 PRUNE1Q86TP1 453 aa12.88□□□□□ -0.35
VPS28-216ENST00000533806 SLC35F3Q8IY50 421 aa12.88□□□□□ -0.35
VPS28-216ENST00000533806 BRSK1Q8TDC3 778 aa12.88□□□□□ -0.35
VPS28-216ENST00000533806 BLOC1S5Q8TDH9 187 aa12.88□□□□□ -0.35
VPS28-216ENST00000533806 MAIP1Q8WWC4 291 aa12.88□□□□□ -0.35
VPS28-216ENST00000533806 PBKQ96KB5 322 aa12.88□□□□□ -0.35
VPS28-216ENST00000533806 TBL1YQ9BQ87 522 aa12.88□□□□□ -0.35
VPS28-216ENST00000533806 SCNM1Q9BWG6 230 aa12.88□□□□□ -0.35
VPS28-216ENST00000533806 TMEM121BQ9BXQ6 578 aaPredicted RBP12.88□□□□□ -0.35
VPS28-216ENST00000533806 CARS2Q9HA77 564 aaKnown RBP12.88□□□□□ -0.35
VPS28-216ENST00000533806 NCKIPSDQ9NZQ3 722 aa12.88□□□□□ -0.35
VPS28-216ENST00000533806 ZNF148Q9UQR1 794 aa12.88□□□□□ -0.35
VPS28-216ENST00000533806 NEUROG3Q9Y4Z2 214 aa12.88□□□□□ -0.35
VPS28-216ENST00000533806 ACACBO00763 2458 aa12.88□□□□□ -0.35
VPS28-216ENST00000533806 FREM2Q5SZK8 3169 aa12.88□□□□□ -0.35
VPS28-216ENST00000533806 LRP4O75096 1905 aa12.88□□□□□ -0.35
VPS28-216ENST00000533806 GOLGA6CA6NDK9 693 aa12.87□□□□□ -0.35
VPS28-216ENST00000533806 GOLGA6BA6NDN3 693 aa12.87□□□□□ -0.35
VPS28-216ENST00000533806 INPP4BO15327 924 aa12.87□□□□□ -0.35
VPS28-216ENST00000533806 RFPL3O75679 317 aa12.87□□□□□ -0.35
VPS28-216ENST00000533806 SUN1O94901 812 aa12.87□□□□□ -0.35
VPS28-216ENST00000533806 GP1BAP07359 652 aa12.87□□□□□ -0.35
VPS28-216ENST00000533806 GOLGA6DP0CG33 693 aa12.87□□□□□ -0.35
VPS28-216ENST00000533806 CTSEP14091 401 aa12.87□□□□□ -0.35
VPS28-216ENST00000533806 PSMA3P25788 255 aa12.87□□□□□ -0.35
VPS28-216ENST00000533806 CA5AP35218 305 aa12.87□□□□□ -0.35
VPS28-216ENST00000533806 ADCY8P40145 1251 aa12.87□□□□□ -0.35
VPS28-216ENST00000533806 PTPRCAPQ14761 206 aa12.87□□□□□ -0.35
VPS28-216ENST00000533806 TAF1AQ15573 450 aaPredicted RBP12.87□□□□□ -0.35
VPS28-216ENST00000533806 LONRF2Q1L5Z9 754 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms