RNA–Protein interactions for RNA: ENST00000533733.5

ATM-222, Transcript of ATM serine/threonine kinase, human

TSL 1 (best)

Gene ATM, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATM-222	ENST00000533733	PKNOX1	P55347	436 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	MS4A2	Q01362	244 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	CLC	Q05315	142 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	BNIP2	Q12982	314 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	PDK3	Q15120	406 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	GEN1	Q17RS7	908 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	CERS6	Q6ZMG9	384 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	METTL3	Q86U44	580 aa	Known RBP	11.91	□□□□□ -0.5
ATM-222	ENST00000533733	LDB1	Q86U70	411 aa	Predicted RBP	11.91	□□□□□ -0.5
ATM-222	ENST00000533733	PIM3	Q86V86	326 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	SPATA24	Q86W54	205 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	MINDY1	Q8N5J2	469 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	OR7D4	Q8NG98	312 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	OR4K2	Q8NGD2	314 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	GIPC2	Q8TF65	315 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	KCNJ9	Q92806	393 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	MARK4	Q96L34	752 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	SUDS3	Q9H7L9	328 aa	Predicted RBP	11.91	□□□□□ -0.5
ATM-222	ENST00000533733	C8orf4	Q9NR00	106 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	ACSS2	Q9NR19	701 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	CCDC167	Q9P0B6	97 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	CD300A	Q9UGN4	299 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	TRMT6	Q9UJA5	497 aa	Known RBP	11.91	□□□□□ -0.5
ATM-222	ENST00000533733	PCDHB1	Q9Y5F3	818 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733		A0A0D9SEW6	157 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	CXorf51A	A0A1B0GTR3	108 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	TCRBV3S1	A0A5B6	114 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	AQP12B	A6NM10	295 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	TBKBP1	A7MCY6	615 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	SUPT3H	B4E1H0	165 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	ANKRD66	B4E2M5	251 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	ANGPT2	O15123	496 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	RNASEH1	O60930	286 aa	Known RBP	11.91	□□□□□ -0.5
ATM-222	ENST00000533733	CLASP2	O75122	1294 aa	Known RBP	11.91	□□□□□ -0.5
ATM-222	ENST00000533733	SUPT3H	O75486	399 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	NPPA	P01160	153 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	ESR1	P03372	595 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	GPX3	P22352	226 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	SLC7A1	P30825	629 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	ALDH7A1	P49419	539 aa	Known RBP	11.91	□□□□□ -0.5
ATM-222	ENST00000533733	ERF	P50548	548 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	SCNN1B	P51168	640 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	SEMA3A	Q14563	771 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	VEPH1	Q14D04	833 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	OR4D1	Q15615	310 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	PFKFB4	Q16877	469 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	KIF19	Q2TAC6	998 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	RSPO2	Q6UXX9	243 aa	Predicted RBP	11.91	□□□□□ -0.5
ATM-222	ENST00000533733	PRR23B	Q6ZRT6	265 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	AQP12A	Q8IXF9	295 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	FAM126B	Q8IXS8	530 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	RNF168	Q8IYW5	571 aa	Predicted RBP	11.91	□□□□□ -0.5
ATM-222	ENST00000533733	EFCAB3	Q8N7B9	438 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	HMGCLL1	Q8TB92	370 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	ZFAND2B	Q8WV99	257 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	PDLIM5	Q96HC4	596 aa	Known RBP	11.91	□□□□□ -0.5
ATM-222	ENST00000533733	TUBGCP5	Q96RT8	1024 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	ZIC5	Q96T25	663 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	UHRF1	Q96T88	793 aa	Predicted RBP	11.91	□□□□□ -0.5
ATM-222	ENST00000533733	SPON2	Q9BUD6	331 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	YIPF3	Q9GZM5	350 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	AKTIP	Q9H8T0	292 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	ABCD2	Q9UBJ2	740 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	AP4S1	Q9Y587	144 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	RAI2	Q9Y5P3	530 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	DNAJC15	Q9Y5T4	150 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733	SLC4A7	Q9Y6M7	1214 aa		11.91	□□□□□ -0.5
ATM-222	ENST00000533733		E7ENX8	843 aa		11.9	□□□□□ -0.5
ATM-222	ENST00000533733	UBXN8	O00124	270 aa		11.9	□□□□□ -0.5
ATM-222	ENST00000533733	FBP2	O00757	339 aa		11.9	□□□□□ -0.5
ATM-222	ENST00000533733	STX7	O15400	261 aa	Known RBP	11.9	□□□□□ -0.5
ATM-222	ENST00000533733	COCH	O43405	550 aa		11.9	□□□□□ -0.5
ATM-222	ENST00000533733	CRCP	O75575	148 aa		11.9	□□□□□ -0.5
ATM-222	ENST00000533733	STC2	O76061	302 aa		11.9	□□□□□ -0.5
ATM-222	ENST00000533733	UROS	P10746	265 aa		11.9	□□□□□ -0.5
ATM-222	ENST00000533733	HSD17B1	P14061	328 aa		11.9	□□□□□ -0.5
ATM-222	ENST00000533733	CORO1A	P31146	461 aa	Known RBP	11.9	□□□□□ -0.5
ATM-222	ENST00000533733	MAPK8	P45983	427 aa		11.9	□□□□□ -0.5
ATM-222	ENST00000533733	KCNC1	P48547	511 aa		11.9	□□□□□ -0.5
ATM-222	ENST00000533733	SH3BP2	P78314	561 aa		11.9	□□□□□ -0.5
ATM-222	ENST00000533733	CYTH1	Q15438	398 aa		11.9	□□□□□ -0.5
ATM-222	ENST00000533733	ADRM1	Q16186	407 aa		11.9	□□□□□ -0.5
ATM-222	ENST00000533733	LRRC36	Q1X8D7	754 aa		11.9	□□□□□ -0.5
ATM-222	ENST00000533733	DENND1C	Q8IV53	801 aa		11.9	□□□□□ -0.5
ATM-222	ENST00000533733	AHI1	Q8N157	1196 aa		11.9	□□□□□ -0.5
ATM-222	ENST00000533733	CFAP52	Q8N1V2	620 aa		11.9	□□□□□ -0.5
ATM-222	ENST00000533733	RYBP	Q8N488	228 aa	Predicted RBP	11.9	□□□□□ -0.5
ATM-222	ENST00000533733	OR56A4	Q8NGH8	313 aa		11.9	□□□□□ -0.5
ATM-222	ENST00000533733	ZNF483	Q8TF39	744 aa	Predicted RBP	11.9	□□□□□ -0.5
ATM-222	ENST00000533733	SDR39U1	Q9NRG7	319 aa	Predicted RBP	11.9	□□□□□ -0.5
ATM-222	ENST00000533733	RIC8B	Q9NVN3	520 aa		11.9	□□□□□ -0.5
ATM-222	ENST00000533733	NUDT4	Q9NZJ9	180 aa		11.9	□□□□□ -0.5
ATM-222	ENST00000533733	PADI4	Q9UM07	663 aa		11.9	□□□□□ -0.5
ATM-222	ENST00000533733	TNPO3	Q9Y5L0	923 aa	Known RBP	11.9	□□□□□ -0.5
ATM-222	ENST00000533733	OBSL1	O75147	1896 aa		11.9	□□□□□ -0.5
ATM-222	ENST00000533733		A0A0J9YYE9	177 aa		11.89	□□□□□ -0.51
ATM-222	ENST00000533733	KANSL1L	A0AUZ9	987 aa		11.89	□□□□□ -0.51
ATM-222	ENST00000533733	TTC24	A2A3L6	582 aa	Predicted RBP	11.89	□□□□□ -0.51
ATM-222	ENST00000533733	CCL22	O00626	93 aa		11.89	□□□□□ -0.51
ATM-222	ENST00000533733	TXNDC9	O14530	226 aa		11.89	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms