RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 ACTR1AP61163 376 aa13.59□□□□□ -0.23
TCOF1-215ENST00000515516 SKOR1P84550 965 aa13.59□□□□□ -0.23
TCOF1-215ENST00000515516 COL9A2Q14055 689 aaPredicted RBP13.59□□□□□ -0.23
TCOF1-215ENST00000515516 TFDP2Q14188 446 aa13.59□□□□□ -0.23
TCOF1-215ENST00000515516 TCEAL1Q15170 157 aa13.59□□□□□ -0.23
TCOF1-215ENST00000515516 QPCTQ16769 361 aa13.59□□□□□ -0.23
TCOF1-215ENST00000515516 AMZ1Q400G9 498 aa13.59□□□□□ -0.23
TCOF1-215ENST00000515516 PHF19Q5T6S3 580 aa13.59□□□□□ -0.23
TCOF1-215ENST00000515516 NPNTQ6UXI9 565 aa13.59□□□□□ -0.23
TCOF1-215ENST00000515516 TRIM74Q86UV6 250 aa13.59□□□□□ -0.23
TCOF1-215ENST00000515516 PIM3Q86V86 326 aa13.59□□□□□ -0.23
TCOF1-215ENST00000515516 NRROSQ86YC3 692 aa13.59□□□□□ -0.23
TCOF1-215ENST00000515516 SFTPA2Q8IWL1 248 aa13.59□□□□□ -0.23
TCOF1-215ENST00000515516 SCARF2Q96GP6 870 aaPredicted RBP13.59□□□□□ -0.23
TCOF1-215ENST00000515516 CMKLR1Q99788 373 aa13.59□□□□□ -0.23
TCOF1-215ENST00000515516 LUC7LQ9NQ29 371 aaKnown RBP13.59□□□□□ -0.23
TCOF1-215ENST00000515516 ZNHIT2Q9UHR6 403 aa13.59□□□□□ -0.23
TCOF1-215ENST00000515516 LOXL2Q9Y4K0 774 aa13.59□□□□□ -0.23
TCOF1-215ENST00000515516 DSPP15924 2871 aaKnown RBP13.59□□□□□ -0.23
TCOF1-215ENST00000515516 LAMA5O15230 3695 aa13.59□□□□□ -0.23
TCOF1-215ENST00000515516 CDRT15L2A8MXV6 281 aa13.58□□□□□ -0.24
TCOF1-215ENST00000515516 CPNE6O95741 557 aa13.58□□□□□ -0.24
TCOF1-215ENST00000515516 SOD1P00441 154 aa13.58□□□□□ -0.24
TCOF1-215ENST00000515516 MMP2P08253 660 aa13.58□□□□□ -0.24
TCOF1-215ENST00000515516 GPR3P46089 330 aa13.58□□□□□ -0.24
TCOF1-215ENST00000515516 NR2C2P49116 596 aa13.58□□□□□ -0.24
TCOF1-215ENST00000515516 SPINT3P49223 89 aa13.58□□□□□ -0.24
TCOF1-215ENST00000515516 OR1D5P58170 312 aa13.58□□□□□ -0.24
TCOF1-215ENST00000515516 ZBTB17Q13105 803 aa13.58□□□□□ -0.24
TCOF1-215ENST00000515516 TBX2Q13207 712 aaPredicted RBP13.58□□□□□ -0.24
TCOF1-215ENST00000515516 LRP8Q14114 963 aa13.58□□□□□ -0.24
TCOF1-215ENST00000515516 GALNT3Q14435 633 aa13.58□□□□□ -0.24
TCOF1-215ENST00000515516 IHHQ14623 411 aa13.58□□□□□ -0.24
TCOF1-215ENST00000515516 SPA17Q15506 151 aa13.58□□□□□ -0.24
TCOF1-215ENST00000515516 CLPPQ16740 277 aaPredicted RBP13.58□□□□□ -0.24
TCOF1-215ENST00000515516 PYCR3Q53H96 274 aa13.58□□□□□ -0.24
TCOF1-215ENST00000515516 KDELC2Q7Z4H8 507 aa13.58□□□□□ -0.24
TCOF1-215ENST00000515516 CLEC14AQ86T13 490 aa13.58□□□□□ -0.24
TCOF1-215ENST00000515516 CNTD1Q8N815 330 aa13.58□□□□□ -0.24
TCOF1-215ENST00000515516 SRPK1Q96SB4 655 aaKnown RBP13.58□□□□□ -0.24
TCOF1-215ENST00000515516 AGAP2Q99490 1192 aa13.58□□□□□ -0.24
TCOF1-215ENST00000515516 CEP41Q9BYV8 373 aa13.58□□□□□ -0.24
TCOF1-215ENST00000515516 ZMYND15Q9H091 742 aa13.58□□□□□ -0.24
TCOF1-215ENST00000515516 SLC25A51Q9H1U9 297 aa13.58□□□□□ -0.24
TCOF1-215ENST00000515516 ZFYVE1Q9HBF4 777 aa13.58□□□□□ -0.24
TCOF1-215ENST00000515516 RAD18Q9NS91 495 aa13.58□□□□□ -0.24
TCOF1-215ENST00000515516 PISDQ9UG56 409 aa13.58□□□□□ -0.24
TCOF1-215ENST00000515516 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.58□□□□□ -0.24
TCOF1-215ENST00000515516 HYOU1Q9Y4L1 999 aa13.58□□□□□ -0.24
TCOF1-215ENST00000515516 ZFYVE26Q68DK2 2539 aa13.57□□□□□ -0.24
TCOF1-215ENST00000515516 CACNA1GO43497 2377 aa13.57□□□□□ -0.24
TCOF1-215ENST00000515516 PMS2P1A4D2B8 440 aa13.57□□□□□ -0.24
TCOF1-215ENST00000515516 B4GAT1O43505 415 aa13.57□□□□□ -0.24
TCOF1-215ENST00000515516 PSTPIP1O43586 416 aa13.57□□□□□ -0.24
TCOF1-215ENST00000515516 B4GALNT1Q00973 533 aa13.57□□□□□ -0.24
TCOF1-215ENST00000515516 CDK18Q07002 472 aa13.57□□□□□ -0.24
TCOF1-215ENST00000515516 ZFP36L1Q07352 338 aaKnown RBP13.57□□□□□ -0.24
TCOF1-215ENST00000515516 PCSK7Q16549 785 aa13.57□□□□□ -0.24
TCOF1-215ENST00000515516 ARHGAP40Q5TG30 622 aa13.57□□□□□ -0.24
TCOF1-215ENST00000515516 KAZNQ674X7 775 aa13.57□□□□□ -0.24
TCOF1-215ENST00000515516 SARM1Q6SZW1 724 aa13.57□□□□□ -0.24
TCOF1-215ENST00000515516 MFSD7Q6UXD7 560 aa13.57□□□□□ -0.24
TCOF1-215ENST00000515516 C17orf82Q86X59 251 aaPredicted RBP13.57□□□□□ -0.24
TCOF1-215ENST00000515516 PTCD2Q8WV60 388 aaKnown RBP13.57□□□□□ -0.24
TCOF1-215ENST00000515516 TFB1MQ8WVM0 346 aaKnown RBP13.57□□□□□ -0.24
TCOF1-215ENST00000515516 IMP4Q96G21 291 aaKnown RBP13.57□□□□□ -0.24
TCOF1-215ENST00000515516 COX14Q96I36 57 aa13.57□□□□□ -0.24
TCOF1-215ENST00000515516 OLFM3Q96PB7 478 aa13.57□□□□□ -0.24
TCOF1-215ENST00000515516 SPATA16Q9BXB7 569 aa13.57□□□□□ -0.24
TCOF1-215ENST00000515516 GPR63Q9BZJ6 419 aa13.57□□□□□ -0.24
TCOF1-215ENST00000515516 STN1Q9H668 368 aaKnown RBP13.57□□□□□ -0.24
TCOF1-215ENST00000515516 RMI1Q9H9A7 625 aa13.57□□□□□ -0.24
TCOF1-215ENST00000515516 CPNE5Q9HCH3 593 aa13.57□□□□□ -0.24
TCOF1-215ENST00000515516 VPS18Q9P253 973 aa13.57□□□□□ -0.24
TCOF1-215ENST00000515516 PLEKHM1Q9Y4G2 1056 aa13.57□□□□□ -0.24
TCOF1-215ENST00000515516 PCDHGA7Q9Y5G6 932 aa13.57□□□□□ -0.24
TCOF1-215ENST00000515516 A0A0A6YYK5 440 aaPredicted RBP13.56□□□□□ -0.24
TCOF1-215ENST00000515516 TK2O00142 265 aa13.56□□□□□ -0.24
TCOF1-215ENST00000515516 AGRPO00253 132 aa13.56□□□□□ -0.24
TCOF1-215ENST00000515516 ATXN7O15265 892 aaPredicted RBP13.56□□□□□ -0.24
TCOF1-215ENST00000515516 MTSS1O43312 755 aa13.56□□□□□ -0.24
TCOF1-215ENST00000515516 CST8O60676 142 aa13.56□□□□□ -0.24
TCOF1-215ENST00000515516 ZRANB2O95218 330 aaKnown RBP eCLIP13.56□□□□□ -0.24
TCOF1-215ENST00000515516 SLC4A1P02730 911 aa13.56□□□□□ -0.24
TCOF1-215ENST00000515516 ATP1A1P05023 1023 aaKnown RBP13.56□□□□□ -0.24
TCOF1-215ENST00000515516 HGFP14210 728 aa13.56□□□□□ -0.24
TCOF1-215ENST00000515516 SLC5A2P31639 672 aa13.56□□□□□ -0.24
TCOF1-215ENST00000515516 CYLC1P35663 651 aaPredicted RBP13.56□□□□□ -0.24
TCOF1-215ENST00000515516 VAC14Q08AM6 782 aa13.56□□□□□ -0.24
TCOF1-215ENST00000515516 TEX44Q53QW1 395 aa13.56□□□□□ -0.24
TCOF1-215ENST00000515516 TAF1BQ53T94 588 aaPredicted RBP13.56□□□□□ -0.24
TCOF1-215ENST00000515516 HENMT1Q5T8I9 393 aaKnown RBP13.56□□□□□ -0.24
TCOF1-215ENST00000515516 TMEM164Q5U3C3 297 aa13.56□□□□□ -0.24
TCOF1-215ENST00000515516 USP53Q70EK8 1073 aa13.56□□□□□ -0.24
TCOF1-215ENST00000515516 CHST15Q7LFX5 561 aaPredicted RBP13.56□□□□□ -0.24
TCOF1-215ENST00000515516 LYSMD3Q7Z3D4 306 aa13.56□□□□□ -0.24
TCOF1-215ENST00000515516 ZNF438Q7Z4V0 828 aa13.56□□□□□ -0.24
TCOF1-215ENST00000515516 CCDC50Q8IVM0 306 aa13.56□□□□□ -0.24
TCOF1-215ENST00000515516 CCDC170Q8IYT3 715 aa13.56□□□□□ -0.24
TCOF1-215ENST00000515516 RCOR2Q8IZ40 523 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms