RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 RGRP47804 291 aa14.79□□□□□ -0.04
NUP54-217ENST00000514987 SH3BP2P78314 561 aa14.79□□□□□ -0.04
NUP54-217ENST00000514987 GRIK2Q13002 908 aa14.79□□□□□ -0.04
NUP54-217ENST00000514987 GEN1Q17RS7 908 aa14.79□□□□□ -0.04
NUP54-217ENST00000514987 IRAK1BP1Q5VVH5 260 aa14.79□□□□□ -0.04
NUP54-217ENST00000514987 CLEC6AQ6EIG7 209 aa14.79□□□□□ -0.04
NUP54-217ENST00000514987 PAQR3Q6TCH7 311 aa14.79□□□□□ -0.04
NUP54-217ENST00000514987 SPATA19Q7Z5L4 167 aa14.79□□□□□ -0.04
NUP54-217ENST00000514987 ST13P4Q8IZP2 240 aaPredicted RBP14.79□□□□□ -0.04
NUP54-217ENST00000514987 MIER2Q8N344 545 aa14.79□□□□□ -0.04
NUP54-217ENST00000514987 MDGA1Q8NFP4 955 aa14.79□□□□□ -0.04
NUP54-217ENST00000514987 TSPEARQ8WU66 669 aa14.79□□□□□ -0.04
NUP54-217ENST00000514987 EXT2Q93063 718 aa14.79□□□□□ -0.04
NUP54-217ENST00000514987 IGSF21Q96ID5 467 aa14.79□□□□□ -0.04
NUP54-217ENST00000514987 CCT7Q99832 543 aa14.79□□□□□ -0.04
NUP54-217ENST00000514987 HOPXQ9BPY8 73 aaPredicted RBP14.79□□□□□ -0.04
NUP54-217ENST00000514987 AKTIPQ9H8T0 292 aa14.79□□□□□ -0.04
NUP54-217ENST00000514987 CREBZFQ9NS37 354 aa14.79□□□□□ -0.04
NUP54-217ENST00000514987 CCDC167Q9P0B6 97 aa14.79□□□□□ -0.04
NUP54-217ENST00000514987 HCSTQ9UBK5 93 aa14.79□□□□□ -0.04
NUP54-217ENST00000514987 TRMT6Q9UJA5 497 aaKnown RBP14.79□□□□□ -0.04
NUP54-217ENST00000514987 MAFFQ9ULX9 164 aa14.79□□□□□ -0.04
NUP54-217ENST00000514987 DNAJC15Q9Y5T4 150 aa14.79□□□□□ -0.04
NUP54-217ENST00000514987 GBF1Q92538 1859 aa14.79□□□□□ -0.04
NUP54-217ENST00000514987 PRSS51A0A1B0GVH4 220 aa14.78□□□□□ -0.04
NUP54-217ENST00000514987 EIF4E1BA6NMX2 242 aaKnown RBP14.78□□□□□ -0.04
NUP54-217ENST00000514987 SUPT3HB4E1H0 165 aa14.78□□□□□ -0.04
NUP54-217ENST00000514987 FBP2O00757 339 aa14.78□□□□□ -0.04
NUP54-217ENST00000514987 TRIM24O15164 1050 aa14.78□□□□□ -0.04
NUP54-217ENST00000514987 DENRO43583 198 aaKnown RBP14.78□□□□□ -0.04
NUP54-217ENST00000514987 CLASP2O75122 1294 aaKnown RBP14.78□□□□□ -0.04
NUP54-217ENST00000514987 SUPT3HO75486 399 aa14.78□□□□□ -0.04
NUP54-217ENST00000514987 MATN4O95460 622 aa14.78□□□□□ -0.04
NUP54-217ENST00000514987 CHEK2O96017 543 aa14.78□□□□□ -0.04
NUP54-217ENST00000514987 CAPNS1P04632 268 aa14.78□□□□□ -0.04
NUP54-217ENST00000514987 C8BP07358 591 aa14.78□□□□□ -0.04
NUP54-217ENST00000514987 LBPP18428 481 aa14.78□□□□□ -0.04
NUP54-217ENST00000514987 GPX3P22352 226 aa14.78□□□□□ -0.04
NUP54-217ENST00000514987 PTGER3P43115 390 aa14.78□□□□□ -0.04
NUP54-217ENST00000514987 MRPL19P49406 292 aaKnown RBP14.78□□□□□ -0.04
NUP54-217ENST00000514987 AQP4P55087 323 aa14.78□□□□□ -0.04
NUP54-217ENST00000514987 MRPS22P82650 360 aaKnown RBP14.78□□□□□ -0.04
NUP54-217ENST00000514987 MS4A2Q01362 244 aa14.78□□□□□ -0.04
NUP54-217ENST00000514987 CLCQ05315 142 aa14.78□□□□□ -0.04
NUP54-217ENST00000514987 PPP1R3AQ16821 1122 aa14.78□□□□□ -0.04
NUP54-217ENST00000514987 PTPRNQ16849 979 aa14.78□□□□□ -0.04
NUP54-217ENST00000514987 LRRC36Q1X8D7 754 aa14.78□□□□□ -0.04
NUP54-217ENST00000514987 DEFB115Q30KQ5 88 aa14.78□□□□□ -0.04
NUP54-217ENST00000514987 COQ5Q5HYK3 327 aa14.78□□□□□ -0.04
NUP54-217ENST00000514987 CXorf57Q6NSI4 855 aaKnown RBP14.78□□□□□ -0.04
NUP54-217ENST00000514987 NCEH1Q6PIU2 408 aa14.78□□□□□ -0.04
NUP54-217ENST00000514987 RPS27LQ71UM5 84 aaKnown RBP14.78□□□□□ -0.04
NUP54-217ENST00000514987 PNPLA1Q8N8W4 532 aa14.78□□□□□ -0.04
NUP54-217ENST00000514987 HJURPQ8NCD3 748 aaPredicted RBP14.78□□□□□ -0.04
NUP54-217ENST00000514987 HMGCLL1Q8TB92 370 aa14.78□□□□□ -0.04
NUP54-217ENST00000514987 TWIST2Q8WVJ9 160 aa14.78□□□□□ -0.04
NUP54-217ENST00000514987 DUS3LQ96G46 650 aaKnown RBP14.78□□□□□ -0.04
NUP54-217ENST00000514987 TMEM45AQ9NWC5 275 aa14.78□□□□□ -0.04
NUP54-217ENST00000514987 RIMS3Q9UJD0 308 aa14.78□□□□□ -0.04
NUP54-217ENST00000514987 CNOT11Q9UKZ1 510 aaKnown RBP14.78□□□□□ -0.04
NUP54-217ENST00000514987 RAB26Q9ULW5 256 aa14.78□□□□□ -0.04
NUP54-217ENST00000514987 TANC1Q9C0D5 1861 aa14.77□□□□□ -0.04
NUP54-217ENST00000514987 E7ENX8 843 aa14.77□□□□□ -0.04
NUP54-217ENST00000514987 H3BMM5 538 aa14.77□□□□□ -0.04
NUP54-217ENST00000514987 CRCPO75575 148 aa14.77□□□□□ -0.04
NUP54-217ENST00000514987 TMCC1O94876 653 aa14.77□□□□□ -0.04
NUP54-217ENST00000514987 SEC24AO95486 1093 aa14.77□□□□□ -0.04
NUP54-217ENST00000514987 ESR1P03372 595 aa14.77□□□□□ -0.04
NUP54-217ENST00000514987 RPS17P08708 135 aaKnown RBP14.77□□□□□ -0.04
NUP54-217ENST00000514987 UBTFL6P0CB48 400 aaPredicted RBP14.77□□□□□ -0.04
NUP54-217ENST00000514987 IDO1P14902 403 aa14.77□□□□□ -0.04
NUP54-217ENST00000514987 PAX7P23759 505 aa14.77□□□□□ -0.04
NUP54-217ENST00000514987 EEF1DP29692 281 aaKnown RBP14.77□□□□□ -0.04
NUP54-217ENST00000514987 MC4RP32245 332 aa14.77□□□□□ -0.04
NUP54-217ENST00000514987 CDH13P55290 713 aa14.77□□□□□ -0.04
NUP54-217ENST00000514987 IL2P60568 153 aa14.77□□□□□ -0.04
NUP54-217ENST00000514987 TCTN1Q2MV58 587 aa14.77□□□□□ -0.04
NUP54-217ENST00000514987 KIF19Q2TAC6 998 aa14.77□□□□□ -0.04
NUP54-217ENST00000514987 MAP7D1Q3KQU3 841 aa14.77□□□□□ -0.04
NUP54-217ENST00000514987 C8orf82Q6P1X6 216 aaPredicted RBP14.77□□□□□ -0.04
NUP54-217ENST00000514987 CERS6Q6ZMG9 384 aa14.77□□□□□ -0.04
NUP54-217ENST00000514987 CYHR1Q6ZMK1 362 aa14.77□□□□□ -0.04
NUP54-217ENST00000514987 SPATA24Q86W54 205 aa14.77□□□□□ -0.04
NUP54-217ENST00000514987 HOMEZQ8IX15 550 aa14.77□□□□□ -0.04
NUP54-217ENST00000514987 KCNJ9Q92806 393 aa14.77□□□□□ -0.04
NUP54-217ENST00000514987 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.77□□□□□ -0.04
NUP54-217ENST00000514987 DCUN1D1Q96GG9 259 aa14.77□□□□□ -0.04
NUP54-217ENST00000514987 GBP5Q96PP8 586 aa14.77□□□□□ -0.04
NUP54-217ENST00000514987 GPR21Q99679 349 aa14.77□□□□□ -0.04
NUP54-217ENST00000514987 CLSTN3Q9BQT9 956 aa14.77□□□□□ -0.04
NUP54-217ENST00000514987 EFHD1Q9BUP0 239 aa14.77□□□□□ -0.04
NUP54-217ENST00000514987 GKN1Q9NS71 199 aa14.77□□□□□ -0.04
NUP54-217ENST00000514987 TMEM181Q9P2C4 612 aa14.77□□□□□ -0.04
NUP54-217ENST00000514987 YIPF1Q9Y548 306 aa14.77□□□□□ -0.04
NUP54-217ENST00000514987 ASB3Q9Y575 518 aa14.77□□□□□ -0.04
NUP54-217ENST00000514987 PCDHB1Q9Y5F3 818 aa14.77□□□□□ -0.04
NUP54-217ENST00000514987 H0YJX3 145 aa14.77□□□□□ -0.05
NUP54-217ENST00000514987 GIPC1O14908 333 aa14.77□□□□□ -0.05
NUP54-217ENST00000514987 AP1G1O43747 822 aa14.77□□□□□ -0.05
NUP54-217ENST00000514987 ECI2O75521 394 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms