RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 MAPRE2Q15555 327 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 TAB1Q15750 504 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 KIAA1324Q6UXG2 1013 aaKnown RBP12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 CFAP77Q6ZQR2 320 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 PHF13Q86YI8 300 aaPredicted RBP12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 AQP12AQ8IXF9 295 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 ZNF557Q8N988 423 aaPredicted RBP12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 MFSD3Q96ES6 412 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 STRA6Q9BX79 667 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 ZNF556Q9HAH1 456 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 MFHAS1Q9Y4C4 1052 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 SNX8Q9Y5X2 465 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 ZNFX1Q9P2E3 1918 aaKnown RBP12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 ZNF804BA4D1E1 1349 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 ATP6AP2A0A1C7CYW4 349 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 FAM25EA8MYX2 175 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 SMLR1H3BR10 107 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 ARPC2O15144 300 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 ATG13O75143 517 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 PEX14O75381 377 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 ATP6AP2O75787 350 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 GOT2P00505 430 aaKnown RBP12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 CD36P16671 472 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 HOXA13P31271 388 aaPredicted RBP12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 CDH5P33151 784 aaPredicted RBP12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 PRIM2P49643 509 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 YBX1P67809 324 aaKnown RBP12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 EFR3AQ14156 821 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 SUSD4Q5VX71 490 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 IL31Q6EBC2 164 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 PPP1R18Q6NYC8 613 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 DAW1Q8N136 415 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 LRRC71Q8N4P6 559 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 OR4M2Q8NGB6 313 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 HMGCLL1Q8TB92 370 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 SLC7A6Q92536 515 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 ZNF300Q96RE9 604 aaPredicted RBP12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 LPIN3Q9BQK8 851 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 LXNQ9BS40 222 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 MMP27Q9H306 513 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 EIF3KQ9UBQ5 218 aaKnown RBP12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 FCGR1AP12314 374 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 BMP1P13497 986 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 TCF3P15923 654 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 PCMT1P22061 227 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 ALAS2P22557 587 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 PTPN7P35236 360 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 UBE3AQ05086 875 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 MFSD13AQ14CX5 517 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 TRIP4Q15650 581 aaPredicted RBP12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 FUT11Q495W5 492 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 PYCR3Q53H96 274 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 ASPRV1Q53RT3 343 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 SPANXN2Q5MJ10 180 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 ANKRD34AQ69YU3 496 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 ZNF555Q8NEP9 628 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 CNIH3Q8TBE1 160 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 ITCHQ96J02 903 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 FAM49AQ9H0Q0 323 aaPredicted RBP12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 SAV1Q9H4B6 383 aaPredicted RBP12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 INTS10Q9NVR2 710 aaKnown RBP12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 WRAP73Q9P2S5 460 aaPredicted RBP12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 FAM8A1Q9UBU6 413 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 CYB5R1Q9UHQ9 305 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 VAV3Q9UKW4 847 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 A0A0B4J203 849 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 SLC12A8A0AV02 714 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 CCDC182A6NF36 153 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 LOC110117498-PIK3R3F6TDL0 507 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 SLC1A7O00341 560 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 BTN3A3O00478 584 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 LRCH4O75427 683 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 HNRNPLP14866 589 aaKnown RBP eCLIP12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 GPR50Q13585 617 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 ARHGEF16Q5VV41 709 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 FIP1L1Q6UN15 594 aaKnown RBP12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 PAMR1Q6UXH9 720 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 ZNF767PQ75MW2 155 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 FAM9CQ8IZT9 166 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 ZFAND1Q8TCF1 268 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 RAET1EQ8TD07 263 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 HSD17B14Q9BPX1 270 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 ENOPH1Q9UHY7 261 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 ANAPC2Q9UJX6 822 aa12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.01□□□□□ -0.49
LIMCH1-213ENST00000511496 A0A1W2PRG6 482 aa12□□□□□ -0.49
LIMCH1-213ENST00000511496 DDX39AO00148 427 aaKnown RBP12□□□□□ -0.49
LIMCH1-213ENST00000511496 METTL18O95568 372 aa12□□□□□ -0.49
LIMCH1-213ENST00000511496 STARD3NLO95772 234 aa12□□□□□ -0.49
LIMCH1-213ENST00000511496 CYP2C8P10632 490 aa12□□□□□ -0.49
LIMCH1-213ENST00000511496 TNNI3P19429 210 aa12□□□□□ -0.49
LIMCH1-213ENST00000511496 CHRM3P20309 590 aa12□□□□□ -0.49
LIMCH1-213ENST00000511496 CDH6P55285 790 aa12□□□□□ -0.49
LIMCH1-213ENST00000511496 IL5RAQ01344 420 aa12□□□□□ -0.49
LIMCH1-213ENST00000511496 PICALMQ13492 652 aa12□□□□□ -0.49
LIMCH1-213ENST00000511496 SLC16A10Q8TF71 515 aa12□□□□□ -0.49
LIMCH1-213ENST00000511496 LENG9Q96B70 501 aa12□□□□□ -0.49
LIMCH1-213ENST00000511496 TRNT1Q96Q11 434 aaKnown RBP12□□□□□ -0.49
LIMCH1-213ENST00000511496 OMDQ99983 421 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms