RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 GOLGA6DP0CG33 693 aa16.35■□□□□ 0.21
VIM-208ENST00000497849 MMP8P22894 467 aa16.35■□□□□ 0.21
VIM-208ENST00000497849 MAPK9P45984 424 aa16.35■□□□□ 0.21
VIM-208ENST00000497849 NSUN2Q08J23 767 aaKnown RBP eCLIP16.35■□□□□ 0.21
VIM-208ENST00000497849 Q6ZVL8 140 aa16.35■□□□□ 0.21
VIM-208ENST00000497849 LYSMD3Q7Z3D4 306 aa16.35■□□□□ 0.21
VIM-208ENST00000497849 Q8NA96 180 aa16.35■□□□□ 0.21
VIM-208ENST00000497849 SLC39A8Q9C0K1 460 aa16.35■□□□□ 0.21
VIM-208ENST00000497849 KCTD5Q9NXV2 234 aa16.35■□□□□ 0.21
VIM-208ENST00000497849 GOLGA6AQ9NYA3 693 aa16.35■□□□□ 0.21
VIM-208ENST00000497849 PCYT1BQ9Y5K3 369 aaPredicted RBP16.35■□□□□ 0.21
VIM-208ENST00000497849 MN1Q10571 1320 aaPredicted RBP16.35■□□□□ 0.21
VIM-208ENST00000497849 TTC24A2A3L6 582 aaPredicted RBP16.34■□□□□ 0.21
VIM-208ENST00000497849 KIAA0754O94854 1291 aa16.34■□□□□ 0.21
VIM-208ENST00000497849 VIPR1P32241 457 aa16.34■□□□□ 0.21
VIM-208ENST00000497849 RFC1P35251 1148 aaPredicted RBP16.34■□□□□ 0.21
VIM-208ENST00000497849 PAPOLAP51003 745 aaKnown RBP16.34■□□□□ 0.21
VIM-208ENST00000497849 SCNN1BP51168 640 aa16.34■□□□□ 0.21
VIM-208ENST00000497849 PGDP52209 483 aa16.34■□□□□ 0.21
VIM-208ENST00000497849 NDST2P52849 883 aa16.34■□□□□ 0.21
VIM-208ENST00000497849 EPHA4P54764 986 aa16.34■□□□□ 0.21
VIM-208ENST00000497849 GFERP55789 205 aa16.34■□□□□ 0.21
VIM-208ENST00000497849 SH3BP2P78314 561 aa16.34■□□□□ 0.21
VIM-208ENST00000497849 DNASE1L3Q13609 305 aa16.34■□□□□ 0.21
VIM-208ENST00000497849 PTPRRQ15256 657 aa16.34■□□□□ 0.21
VIM-208ENST00000497849 PAPD7Q5XG87 772 aaKnown RBP16.34■□□□□ 0.21
VIM-208ENST00000497849 CPZQ66K79 652 aa16.34■□□□□ 0.21
VIM-208ENST00000497849 MARK2Q7KZI7 788 aaKnown RBP16.34■□□□□ 0.21
VIM-208ENST00000497849 TRIM74Q86UV6 250 aa16.34■□□□□ 0.21
VIM-208ENST00000497849 PDCD6IPQ8WUM4 868 aaKnown RBP16.34■□□□□ 0.21
VIM-208ENST00000497849 STAMBPL1Q96FJ0 436 aa16.34■□□□□ 0.21
VIM-208ENST00000497849 SLC25A23Q9BV35 468 aa16.34■□□□□ 0.21
VIM-208ENST00000497849 CINPQ9BW66 212 aaPredicted RBP16.34■□□□□ 0.21
VIM-208ENST00000497849 TBC1D10AQ9BXI6 508 aa16.34■□□□□ 0.21
VIM-208ENST00000497849 LUZP4Q9P127 313 aa16.34■□□□□ 0.21
VIM-208ENST00000497849 PCDHGA9Q9Y5G4 932 aaKnown RBP16.34■□□□□ 0.21
VIM-208ENST00000497849 FHOD1Q9Y613 1164 aa16.34■□□□□ 0.21
VIM-208ENST00000497849 GOLGA6L3A6NEY3 463 aa16.33■□□□□ 0.2
VIM-208ENST00000497849 HTRA2O43464 458 aaPredicted RBP16.33■□□□□ 0.2
VIM-208ENST00000497849 NDUFA10O95299 355 aa16.33■□□□□ 0.2
VIM-208ENST00000497849 CYP1A1P04798 512 aaPredicted RBP16.33■□□□□ 0.2
VIM-208ENST00000497849 TNFAIP3P21580 790 aa16.33■□□□□ 0.2
VIM-208ENST00000497849 TYRO3Q06418 890 aa16.33■□□□□ 0.2
VIM-208ENST00000497849 DPTQ07507 201 aa16.33■□□□□ 0.2
VIM-208ENST00000497849 CHAF1BQ13112 559 aa16.33■□□□□ 0.2
VIM-208ENST00000497849 LRP8Q14114 963 aa16.33■□□□□ 0.2
VIM-208ENST00000497849 IYDQ6PHW0 289 aa16.33■□□□□ 0.2
VIM-208ENST00000497849 RFLNAQ6ZTI6 216 aa16.33■□□□□ 0.2
VIM-208ENST00000497849 TECPR1Q7Z6L1 1165 aa16.33■□□□□ 0.2
VIM-208ENST00000497849 MLKLQ8NB16 471 aa16.33■□□□□ 0.2
VIM-208ENST00000497849 EPS8L1Q8TE68 723 aa16.33■□□□□ 0.2
VIM-208ENST00000497849 OR6C1Q96RD1 312 aa16.33■□□□□ 0.2
VIM-208ENST00000497849 RUFY1Q96T51 708 aa16.33■□□□□ 0.2
VIM-208ENST00000497849 C11orf70Q9BRQ4 267 aa16.33■□□□□ 0.2
VIM-208ENST00000497849 TBC1D29Q9UFV1 150 aa16.33■□□□□ 0.2
VIM-208ENST00000497849 FZD10Q9ULW2 581 aa16.33■□□□□ 0.2
VIM-208ENST00000497849 SETD2Q9BYW2 2564 aaPredicted RBP16.33■□□□□ 0.2
VIM-208ENST00000497849 ITPR3Q14573 2671 aa16.32■□□□□ 0.2
VIM-208ENST00000497849 A6NCN8 305 aa16.32■□□□□ 0.2
VIM-208ENST00000497849 NPIPB15A6NHN6 443 aaPredicted RBP16.32■□□□□ 0.2
VIM-208ENST00000497849 PSMD11O00231 422 aa16.32■□□□□ 0.2
VIM-208ENST00000497849 FGF10O15520 208 aaPredicted RBP16.32■□□□□ 0.2
VIM-208ENST00000497849 C9P02748 559 aa16.32■□□□□ 0.2
VIM-208ENST00000497849 CASP14P31944 242 aa16.32■□□□□ 0.2
VIM-208ENST00000497849 GARSP41250 739 aaKnown RBP16.32■□□□□ 0.2
VIM-208ENST00000497849 GPR1P46091 355 aa16.32■□□□□ 0.2
VIM-208ENST00000497849 AP1S1P61966 158 aa16.32■□□□□ 0.2
VIM-208ENST00000497849 JMJD6Q6NYC1 403 aaPredicted RBP16.32■□□□□ 0.2
VIM-208ENST00000497849 SCYL2Q6P3W7 929 aa16.32■□□□□ 0.2
VIM-208ENST00000497849 WDR59Q6PJI9 974 aa16.32■□□□□ 0.2
VIM-208ENST00000497849 ARHGAP36Q6ZRI8 547 aa16.32■□□□□ 0.2
VIM-208ENST00000497849 TSPAN33Q86UF1 283 aa16.32■□□□□ 0.2
VIM-208ENST00000497849 GALNT13Q8IUC8 556 aa16.32■□□□□ 0.2
VIM-208ENST00000497849 ADGRG4Q8IZF6 3080 aa16.32■□□□□ 0.2
VIM-208ENST00000497849 SLC30A5Q8TAD4 765 aa16.32■□□□□ 0.2
VIM-208ENST00000497849 CT55Q8WUE5 264 aa16.32■□□□□ 0.2
VIM-208ENST00000497849 SLC20A1Q8WUM9 679 aa16.32■□□□□ 0.2
VIM-208ENST00000497849 SH3KBP1Q96B97 665 aa16.32■□□□□ 0.2
VIM-208ENST00000497849 ELMO2Q96JJ3 720 aa16.32■□□□□ 0.2
VIM-208ENST00000497849 C9orf72Q96LT7 481 aa16.32■□□□□ 0.2
VIM-208ENST00000497849 NAA15Q9BXJ9 866 aaKnown RBP16.32■□□□□ 0.2
VIM-208ENST00000497849 ACTL8Q9H568 366 aa16.32■□□□□ 0.2
VIM-208ENST00000497849 LHX9Q9NQ69 397 aa16.32■□□□□ 0.2
VIM-208ENST00000497849 OGFRQ9NZT2 677 aa16.32■□□□□ 0.2
VIM-208ENST00000497849 CD84Q9UIB8 345 aa16.32■□□□□ 0.2
VIM-208ENST00000497849 PADI1Q9ULC6 663 aa16.32■□□□□ 0.2
VIM-208ENST00000497849 PCDHGC4Q9Y5F7 938 aa16.32■□□□□ 0.2
VIM-208ENST00000497849 CSMD2Q7Z408 3487 aa16.32■□□□□ 0.2
VIM-208ENST00000497849 CELSR1Q9NYQ6 3014 aa16.31■□□□□ 0.2
VIM-208ENST00000497849 A0A0U1RQS6 177 aa16.31■□□□□ 0.2
VIM-208ENST00000497849 ARHGAP42A6NI28 874 aa16.31■□□□□ 0.2
VIM-208ENST00000497849 CCP110O43303 1012 aa16.31■□□□□ 0.2
VIM-208ENST00000497849 CCNYL3P0C7X3 344 aa16.31■□□□□ 0.2
VIM-208ENST00000497849 KRT3P12035 628 aa16.31■□□□□ 0.2
VIM-208ENST00000497849 GPD1P21695 349 aa16.31■□□□□ 0.2
VIM-208ENST00000497849 PTP4A2Q12974 167 aa16.31■□□□□ 0.2
VIM-208ENST00000497849 IL11RAQ14626 422 aa16.31■□□□□ 0.2
VIM-208ENST00000497849 ADAMTSL4Q6UY14 1074 aa16.31■□□□□ 0.2
VIM-208ENST00000497849 PLXDC1Q8IUK5 500 aa16.31■□□□□ 0.2
VIM-208ENST00000497849 RASGRP3Q8IV61 690 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms