RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 K7ESM1 405 aa17.01■□□□□ 0.31
HDAC6-235ENST00000495515 YKT6O15498 198 aa17.01■□□□□ 0.31
HDAC6-235ENST00000495515 TGM1P22735 817 aa17.01■□□□□ 0.31
HDAC6-235ENST00000495515 IVDP26440 423 aa17.01■□□□□ 0.31
HDAC6-235ENST00000495515 ZNF140P52738 457 aaPredicted RBP17.01■□□□□ 0.31
HDAC6-235ENST00000495515 CDK3Q00526 305 aa17.01■□□□□ 0.31
HDAC6-235ENST00000495515 CALCOCO2Q13137 446 aa17.01■□□□□ 0.31
HDAC6-235ENST00000495515 ITGA9Q13797 1035 aa17.01■□□□□ 0.31
HDAC6-235ENST00000495515 HLA-BQ31612 363 aa17.01■□□□□ 0.31
HDAC6-235ENST00000495515 PARGQ86W56 976 aa17.01■□□□□ 0.31
HDAC6-235ENST00000495515 MMGT1Q8N4V1 131 aa17.01■□□□□ 0.31
HDAC6-235ENST00000495515 FUBP1Q96AE4 644 aaKnown RBP17.01■□□□□ 0.31
HDAC6-235ENST00000495515 HIC2Q96JB3 615 aa17.01■□□□□ 0.31
HDAC6-235ENST00000495515 WDR92Q96MX6 357 aa17.01■□□□□ 0.31
HDAC6-235ENST00000495515 SERPINB12Q96P63 405 aa17.01■□□□□ 0.31
HDAC6-235ENST00000495515 ELF4Q99607 663 aaPredicted RBP17.01■□□□□ 0.31
HDAC6-235ENST00000495515 EDEM2Q9BV94 578 aa17.01■□□□□ 0.31
HDAC6-235ENST00000495515 GAREM1Q9H706 876 aa17.01■□□□□ 0.31
HDAC6-235ENST00000495515 IL26Q9NPH9 171 aa17.01■□□□□ 0.31
HDAC6-235ENST00000495515 NLE1Q9NVX2 485 aaPredicted RBP17.01■□□□□ 0.31
HDAC6-235ENST00000495515 SAMD15Q9P1V8 674 aa17.01■□□□□ 0.31
HDAC6-235ENST00000495515 ANAPC5Q9UJX4 755 aa17.01■□□□□ 0.31
HDAC6-235ENST00000495515 FNDC3AQ9Y2H6 1198 aaKnown RBP17.01■□□□□ 0.31
HDAC6-235ENST00000495515 TCAF1Q9Y4C2 921 aa17.01■□□□□ 0.31
HDAC6-235ENST00000495515 MAGEB16A2A368 324 aa17■□□□□ 0.31
HDAC6-235ENST00000495515 MROH6A6NGR9 719 aa17■□□□□ 0.31
HDAC6-235ENST00000495515 SDR42E2A6NKP2 422 aa17■□□□□ 0.31
HDAC6-235ENST00000495515 GOLGA8MH3BSY2 632 aa17■□□□□ 0.31
HDAC6-235ENST00000495515 SEC31AO94979 1220 aaKnown RBP17■□□□□ 0.31
HDAC6-235ENST00000495515 MGAT1P26572 445 aa17■□□□□ 0.31
HDAC6-235ENST00000495515 BLKP51451 505 aa17■□□□□ 0.31
HDAC6-235ENST00000495515 BNC1Q01954 994 aa17■□□□□ 0.31
HDAC6-235ENST00000495515 ZNF423Q2M1K9 1284 aa17■□□□□ 0.31
HDAC6-235ENST00000495515 CCDC38Q502W7 563 aa17■□□□□ 0.31
HDAC6-235ENST00000495515 GLE1Q53GS7 698 aaKnown RBP17■□□□□ 0.31
HDAC6-235ENST00000495515 FAM151BQ6UXP7 276 aa17■□□□□ 0.31
HDAC6-235ENST00000495515 ZNF534Q76KX8 674 aa17■□□□□ 0.31
HDAC6-235ENST00000495515 CAND1Q86VP6 1230 aaKnown RBP17■□□□□ 0.31
HDAC6-235ENST00000495515 SPATS2Q86XZ4 545 aaKnown RBP17■□□□□ 0.31
HDAC6-235ENST00000495515 SLC22A18ASQ8N1D0 253 aa17■□□□□ 0.31
HDAC6-235ENST00000495515 MINDY1Q8N5J2 469 aa17■□□□□ 0.31
HDAC6-235ENST00000495515 AGAP2Q99490 1192 aa17■□□□□ 0.31
HDAC6-235ENST00000495515 TMEM9BQ9NQ34 198 aa17■□□□□ 0.31
HDAC6-235ENST00000495515 FSCN3Q9NQT6 498 aa17■□□□□ 0.31
HDAC6-235ENST00000495515 WHRNQ9P202 907 aa17■□□□□ 0.31
HDAC6-235ENST00000495515 SNX24Q9Y343 169 aa17■□□□□ 0.31
HDAC6-235ENST00000495515 KCTD3Q9Y597 815 aa17■□□□□ 0.31
HDAC6-235ENST00000495515 H3BM21 787 aa16.99■□□□□ 0.31
HDAC6-235ENST00000495515 H7C0S8 307 aa16.99■□□□□ 0.31
HDAC6-235ENST00000495515 TNFRSF10CO14798 259 aa16.99■□□□□ 0.31
HDAC6-235ENST00000495515 PRAMEF1O95521 474 aa16.99■□□□□ 0.31
HDAC6-235ENST00000495515 SOD1P00441 154 aa16.99■□□□□ 0.31
HDAC6-235ENST00000495515 ITGALP20701 1170 aa16.99■□□□□ 0.31
HDAC6-235ENST00000495515 ITGA8P53708 1063 aa16.99■□□□□ 0.31
HDAC6-235ENST00000495515 MRPS25P82663 173 aaKnown RBP16.99■□□□□ 0.31
HDAC6-235ENST00000495515 TMPRSS15P98073 1019 aa16.99■□□□□ 0.31
HDAC6-235ENST00000495515 PPARDQ03181 441 aa16.99■□□□□ 0.31
HDAC6-235ENST00000495515 FZD2Q14332 565 aa16.99■□□□□ 0.31
HDAC6-235ENST00000495515 PTPRCAPQ14761 206 aa16.99■□□□□ 0.31
HDAC6-235ENST00000495515 DNAJC21Q5F1R6 531 aaKnown RBP16.99■□□□□ 0.31
HDAC6-235ENST00000495515 TSTD2Q5T7W7 516 aa16.99■□□□□ 0.31
HDAC6-235ENST00000495515 HIBCHQ6NVY1 386 aaPredicted RBP16.99■□□□□ 0.31
HDAC6-235ENST00000495515 CASC4Q6P4E1 433 aa16.99■□□□□ 0.31
HDAC6-235ENST00000495515 ENPP7Q6UWV6 458 aa16.99■□□□□ 0.31
HDAC6-235ENST00000495515 KDM7AQ6ZMT4 941 aa16.99■□□□□ 0.31
HDAC6-235ENST00000495515 PHYKPLQ8IUZ5 450 aa16.99■□□□□ 0.31
HDAC6-235ENST00000495515 PDIK1LQ8N165 341 aa16.99■□□□□ 0.31
HDAC6-235ENST00000495515 PELI3Q8N2H9 469 aa16.99■□□□□ 0.31
HDAC6-235ENST00000495515 OR56A4Q8NGH8 313 aa16.99■□□□□ 0.31
HDAC6-235ENST00000495515 OR13C4Q8NGS5 318 aa16.99■□□□□ 0.31
HDAC6-235ENST00000495515 ZNF398Q8TD17 642 aa16.99■□□□□ 0.31
HDAC6-235ENST00000495515 BTN2A2Q8WVV5 523 aa16.99■□□□□ 0.31
HDAC6-235ENST00000495515 GLYATL1Q969I3 302 aa16.99■□□□□ 0.31
HDAC6-235ENST00000495515 DNAJC1Q96KC8 554 aaKnown RBP16.99■□□□□ 0.31
HDAC6-235ENST00000495515 VPS35Q96QK1 796 aa16.99■□□□□ 0.31
HDAC6-235ENST00000495515 MRM3Q9HC36 420 aaKnown RBP16.99■□□□□ 0.31
HDAC6-235ENST00000495515 DNAJC28Q9NX36 388 aa16.99■□□□□ 0.31
HDAC6-235ENST00000495515 KLQ9UEF7 1012 aa16.99■□□□□ 0.31
HDAC6-235ENST00000495515 FKBPLQ9UIM3 349 aa16.99■□□□□ 0.31
HDAC6-235ENST00000495515 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.99■□□□□ 0.31
HDAC6-235ENST00000495515 SLC30A1Q9Y6M5 507 aa16.99■□□□□ 0.31
HDAC6-235ENST00000495515 A0A1B0GTQ1 180 aa16.98■□□□□ 0.31
HDAC6-235ENST00000495515 FADS2P1A8MWK0 482 aa16.98■□□□□ 0.31
HDAC6-235ENST00000495515 INPP4BO15327 924 aa16.98■□□□□ 0.31
HDAC6-235ENST00000495515 AVILO75366 819 aa16.98■□□□□ 0.31
HDAC6-235ENST00000495515 SRP72O76094 671 aaKnown RBP16.98■□□□□ 0.31
HDAC6-235ENST00000495515 SLC25A14O95258 325 aaPredicted RBP16.98■□□□□ 0.31
HDAC6-235ENST00000495515 RASGRP1O95267 797 aa16.98■□□□□ 0.31
HDAC6-235ENST00000495515 ZNF883P0CG24 379 aa16.98■□□□□ 0.31
HDAC6-235ENST00000495515 PSMA3P25788 255 aa16.98■□□□□ 0.31
HDAC6-235ENST00000495515 RPL21P46778 160 aaKnown RBP16.98■□□□□ 0.31
HDAC6-235ENST00000495515 RXRGP48443 463 aa16.98■□□□□ 0.31
HDAC6-235ENST00000495515 CCT8P50990 548 aa16.98■□□□□ 0.31
HDAC6-235ENST00000495515 HNRNPKP61978 463 aaKnown RBP eCLIP16.98■□□□□ 0.31
HDAC6-235ENST00000495515 ARHGAP8P85298 464 aa16.98■□□□□ 0.31
HDAC6-235ENST00000495515 CAV1Q03135 178 aa16.98■□□□□ 0.31
HDAC6-235ENST00000495515 SUZ12Q15022 739 aaKnown RBP16.98■□□□□ 0.31
HDAC6-235ENST00000495515 CHRNA6Q15825 494 aa16.98■□□□□ 0.31
HDAC6-235ENST00000495515 DUPD1Q68J44 220 aa16.98■□□□□ 0.31
HDAC6-235ENST00000495515 GDAP1Q8TB36 358 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms