RNA–Protein interactions for RNA: ENST00000493886.5

VCP-207, Transcript of valosin containing protein, humanhuman

TSL 2

Gene VCP, Length 2,942 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-207ENST00000493886 ILF2Q12905 390 aaKnown RBP13.74□□□□□ -0.21
VCP-207ENST00000493886 LSM12Q3MHD2 195 aaKnown RBP13.74□□□□□ -0.21
VCP-207ENST00000493886 TCEAL8Q8IYN2 117 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 FAM156AQ8NDB6 213 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 SH3RF2Q8TEC5 729 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 CNDP1Q96KN2 507 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 SLC22A12Q96S37 553 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 NLE1Q9NVX2 485 aaPredicted RBP13.74□□□□□ -0.21
VCP-207ENST00000493886 STOML2Q9UJZ1 356 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 MTF2Q9Y483 593 aaPredicted RBP13.74□□□□□ -0.21
VCP-207ENST00000493886 INSL5Q9Y5Q6 135 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 MYOCOSA0A1B0GUC4 107 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 IPO13O94829 963 aaKnown RBP13.74□□□□□ -0.21
VCP-207ENST00000493886 F11P03951 625 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 LAG3P18627 525 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 CES1P23141 567 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 ZNF140P52738 457 aaPredicted RBP13.74□□□□□ -0.21
VCP-207ENST00000493886 THOP1P52888 689 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 AAGABQ6PD74 315 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 ACAD11Q709F0 780 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 GLT6D1Q7Z4J2 308 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 DDX53Q86TM3 631 aaKnown RBP13.74□□□□□ -0.21
VCP-207ENST00000493886 KDM1BQ8NB78 822 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 RCN3Q96D15 328 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 TRAPPC9Q96Q05 1148 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 ZNF334Q9HCZ1 680 aaPredicted RBP13.74□□□□□ -0.21
VCP-207ENST00000493886 PCDHGB4Q9UN71 923 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 WDR37Q9Y2I8 494 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 PCDHGB5Q9Y5G0 923 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 H3BNX3 289 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 SNAP91O60641 907 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 TBL1XO60907 577 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 OR6B1O95007 311 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 CD160O95971 181 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 VCLP18206 1134 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 PMLP29590 882 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 PRDX6P30041 224 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 RFC2P35250 354 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 CNPY1Q3B7I2 92 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 LINGO4Q6UY18 593 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 CARNMT1Q8N4J0 409 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 SNX31Q8N9S9 440 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 MDGA1Q8NFP4 955 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 STON2Q8WXE9 905 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 CDRT15Q96T59 188 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 CRISPLD2Q9H0B8 497 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 CDYLQ9Y232 598 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 PCDHGC4Q9Y5F7 938 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 RAI2Q9Y5P3 530 aa13.74□□□□□ -0.21
VCP-207ENST00000493886 H0Y626 953 aa13.73□□□□□ -0.21
VCP-207ENST00000493886 TMCC1O94876 653 aa13.73□□□□□ -0.21
VCP-207ENST00000493886 CLTBP09497 229 aa13.73□□□□□ -0.21
VCP-207ENST00000493886 HNRNPLP14866 589 aaKnown RBP eCLIP13.73□□□□□ -0.21
VCP-207ENST00000493886 UQCRBP14927 111 aa13.73□□□□□ -0.21
VCP-207ENST00000493886 HOXB8P17481 243 aaPredicted RBP13.73□□□□□ -0.21
VCP-207ENST00000493886 XRCC1P18887 633 aaPredicted RBP13.73□□□□□ -0.21
VCP-207ENST00000493886 STC1P52823 247 aa13.73□□□□□ -0.21
VCP-207ENST00000493886 PLK1P53350 603 aa13.73□□□□□ -0.21
VCP-207ENST00000493886 MTTPP55157 894 aa13.73□□□□□ -0.21
VCP-207ENST00000493886 TAF1AQ15573 450 aaPredicted RBP13.73□□□□□ -0.21
VCP-207ENST00000493886 SH2D4BQ5SQS7 431 aa13.73□□□□□ -0.21
VCP-207ENST00000493886 SLC15A3Q8IY34 581 aa13.73□□□□□ -0.21
VCP-207ENST00000493886 LPCAT1Q8NF37 534 aa13.73□□□□□ -0.21
VCP-207ENST00000493886 OR4K2Q8NGD2 314 aa13.73□□□□□ -0.21
VCP-207ENST00000493886 SMIM14Q96QK8 99 aa13.73□□□□□ -0.21
VCP-207ENST00000493886 ALG9Q9H6U8 611 aa13.73□□□□□ -0.21
VCP-207ENST00000493886 LTBP2Q14767 1821 aa13.73□□□□□ -0.21
VCP-207ENST00000493886 SUPT3HO75486 399 aa13.73□□□□□ -0.21
VCP-207ENST00000493886 LATS1O95835 1130 aa13.73□□□□□ -0.21
VCP-207ENST00000493886 PRSS56P0CW18 603 aa13.73□□□□□ -0.21
VCP-207ENST00000493886 MZF1P28698 734 aaPredicted RBP13.73□□□□□ -0.21
VCP-207ENST00000493886 TIAL1Q01085 375 aaKnown RBP eCLIP13.73□□□□□ -0.21
VCP-207ENST00000493886 TYSND1Q2T9J0 566 aa13.73□□□□□ -0.21
VCP-207ENST00000493886 ZNF783Q6ZMS7 281 aa13.73□□□□□ -0.21
VCP-207ENST00000493886 RPS27LQ71UM5 84 aaKnown RBP13.73□□□□□ -0.21
VCP-207ENST00000493886 ISCA2Q86U28 154 aa13.73□□□□□ -0.21
VCP-207ENST00000493886 ST13P4Q8IZP2 240 aaPredicted RBP13.73□□□□□ -0.21
VCP-207ENST00000493886 ARL14EPQ8N8R7 260 aaPredicted RBP13.73□□□□□ -0.21
VCP-207ENST00000493886 NACC2Q96BF6 587 aa13.73□□□□□ -0.21
VCP-207ENST00000493886 PHF21BQ96EK2 531 aa13.73□□□□□ -0.21
VCP-207ENST00000493886 TMA16Q96EY4 203 aaKnown RBP13.73□□□□□ -0.21
VCP-207ENST00000493886 CCDC28BQ9BUN5 200 aa13.73□□□□□ -0.21
VCP-207ENST00000493886 MRPL17Q9NRX2 175 aaKnown RBP13.73□□□□□ -0.21
VCP-207ENST00000493886 GTSE1Q9NYZ3 720 aa13.73□□□□□ -0.21
VCP-207ENST00000493886 hCG_2014768A0A024R1R8 64 aa13.72□□□□□ -0.21
VCP-207ENST00000493886 BTKQ06187 659 aa13.72□□□□□ -0.21
VCP-207ENST00000493886 PDK3Q15120 406 aa13.72□□□□□ -0.21
VCP-207ENST00000493886 LIN52Q52LA3 116 aa13.72□□□□□ -0.21
VCP-207ENST00000493886 TXNDC8Q6A555 127 aa13.72□□□□□ -0.21
VCP-207ENST00000493886 AFTPHQ6ULP2 937 aa13.72□□□□□ -0.21
VCP-207ENST00000493886 SATL1Q86VE3 508 aa13.72□□□□□ -0.21
VCP-207ENST00000493886 SLC22A9Q8IVM8 553 aa13.72□□□□□ -0.21
VCP-207ENST00000493886 CMTR2Q8IYT2 770 aaKnown RBP13.72□□□□□ -0.21
VCP-207ENST00000493886 ADAMTS19Q8TE59 1207 aa13.72□□□□□ -0.21
VCP-207ENST00000493886 JADE3Q92613 823 aa13.72□□□□□ -0.21
VCP-207ENST00000493886 AARSD1Q9BTE6 412 aaKnown RBP13.72□□□□□ -0.21
VCP-207ENST00000493886 IL21Q9HBE4 155 aa13.72□□□□□ -0.21
VCP-207ENST00000493886 PAIP2BQ9ULR5 123 aaKnown RBP13.72□□□□□ -0.21
VCP-207ENST00000493886 DTNAQ9Y4J8 743 aa13.72□□□□□ -0.21
VCP-207ENST00000493886 PLXNA4Q9HCM2 1894 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms