RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 FAM170AA1A519 330 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 LRRD1A4D1F6 860 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 TMEM202A6NGA9 273 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 E7EVH7 732 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 INSIG1O15503 277 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 B4GAT1O43505 415 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 NUDT21O43809 227 aaKnown RBP13.16□□□□□ -0.3
HDAC3-213ENST00000492506 TMCC1O94876 653 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 TNFP01375 233 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 ADRA1BP35368 520 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 CASRP41180 1078 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 SUOXP51687 545 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 KCNAB2Q13303 367 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 CUL3Q13618 768 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 EFHC2Q5JST6 749 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 PHF19Q5T6S3 580 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 DPY19L2P1Q6NXN4 242 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 ARCQ7LC44 396 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 SPATA21Q7Z572 469 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 ARHGAP22Q7Z5H3 698 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 CROCCP2Q86T23 111 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 IRF2BP1Q8IU81 584 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 FAM71AQ8IYT1 594 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 IQCKQ8N0W5 287 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 PLA2G15Q8NCC3 412 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 TMEM35BQ8NCS4 154 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 FAM46DQ8NEK8 389 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 OR1E3Q8WZA6 343 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 GDAP1L1Q96MZ0 367 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 PSMG3-AS1Q96PY0 264 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 KLC2Q9H0B6 622 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 NOL6Q9H6R4 1146 aaKnown RBP13.16□□□□□ -0.3
HDAC3-213ENST00000492506 RDH14Q9HBH5 336 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 FGF22Q9HCT0 170 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 HAUS2Q9NVX0 235 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 TUBD1Q9UJT1 453 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 MAN2B2Q9Y2E5 1009 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 ITPR2Q14571 2701 aa13.16□□□□□ -0.3
HDAC3-213ENST00000492506 TSPAN11A1L157 253 aa13.15□□□□□ -0.3
HDAC3-213ENST00000492506 GTPBP10A4D1E9 387 aaKnown RBP13.15□□□□□ -0.3
HDAC3-213ENST00000492506 LRRC10BA6NIK2 292 aa13.15□□□□□ -0.3
HDAC3-213ENST00000492506 STMND1H3BQB6 276 aa13.15□□□□□ -0.3
HDAC3-213ENST00000492506 RAMP2O60895 175 aa13.15□□□□□ -0.3
HDAC3-213ENST00000492506 LRIG2O94898 1065 aa13.15□□□□□ -0.3
HDAC3-213ENST00000492506 FGF3P11487 239 aaPredicted RBP13.15□□□□□ -0.3
HDAC3-213ENST00000492506 ELP6Q0PNE2 266 aa13.15□□□□□ -0.3
HDAC3-213ENST00000492506 PAK1Q13153 545 aa13.15□□□□□ -0.3
HDAC3-213ENST00000492506 LAMB3Q13751 1172 aa13.15□□□□□ -0.3
HDAC3-213ENST00000492506 EXOC3L4Q17RC7 722 aa13.15□□□□□ -0.3
HDAC3-213ENST00000492506 LRRC23Q53EV4 343 aaPredicted RBP13.15□□□□□ -0.3
HDAC3-213ENST00000492506 CCDC181Q5TID7 509 aa13.15□□□□□ -0.3
HDAC3-213ENST00000492506 RWDD4Q6NW29 188 aaKnown RBP13.15□□□□□ -0.3
HDAC3-213ENST00000492506 C17orf82Q86X59 251 aaPredicted RBP13.15□□□□□ -0.3
HDAC3-213ENST00000492506 CCL4L1Q8NHW4 92 aa13.15□□□□□ -0.3
HDAC3-213ENST00000492506 FAM81AQ8TBF8 368 aa13.15□□□□□ -0.3
HDAC3-213ENST00000492506 LRRC45Q96CN5 670 aa13.15□□□□□ -0.3
HDAC3-213ENST00000492506 HMCESQ96FZ2 354 aa13.15□□□□□ -0.3
HDAC3-213ENST00000492506 NSRP1Q9H0G5 558 aaKnown RBP13.15□□□□□ -0.3
HDAC3-213ENST00000492506 TMEM168Q9H0V1 697 aa13.15□□□□□ -0.3
HDAC3-213ENST00000492506 PCDH12Q9NPG4 1184 aa13.15□□□□□ -0.3
HDAC3-213ENST00000492506 MRPL40Q9NQ50 206 aaKnown RBP13.15□□□□□ -0.3
HDAC3-213ENST00000492506 PAPOLBQ9NRJ5 636 aaKnown RBP13.15□□□□□ -0.3
HDAC3-213ENST00000492506 DNAJC12Q9UKB3 198 aa13.15□□□□□ -0.3
HDAC3-213ENST00000492506 HYOU1Q9Y4L1 999 aa13.15□□□□□ -0.3
HDAC3-213ENST00000492506 PCDHGA3Q9Y5H0 932 aa13.15□□□□□ -0.3
HDAC3-213ENST00000492506 ZSCAN5CA6NGD5 496 aaPredicted RBP13.14□□□□□ -0.31
HDAC3-213ENST00000492506 GOLGA8SH3BPF8 625 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 BUB1O43683 1085 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 PIGNO95427 931 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 CPNE6O95741 557 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 IGSF6O95976 241 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 GYPCP04921 128 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 PCCBP05166 539 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 LIFP15018 202 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 MMP12P39900 470 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 KIAA1024LP59773 190 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 ATP11AP98196 1134 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 RAD51Q06609 339 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 MTM1Q13496 603 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 ARHGEF7Q14155 803 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 UGP2Q16851 508 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 INO80DQ53TQ3 878 aaPredicted RBP13.14□□□□□ -0.31
HDAC3-213ENST00000492506 CCDC122Q5T0U0 273 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 TMEM164Q5U3C3 297 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 APTXQ7Z2E3 356 aaKnown RBP13.14□□□□□ -0.31
HDAC3-213ENST00000492506 ZNF438Q7Z4V0 828 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 TAF8Q7Z7C8 310 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 ZSWIM9Q86XI8 627 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 EMC1Q8N766 993 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 CCDC197Q8NCU1 140 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 RCBTB1Q8NDN9 531 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 ACRBPQ8NEB7 543 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 OR56A4Q8NGH8 313 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 ATL2Q8NHH9 583 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 HCAR2Q8TDS4 363 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 CCT6BQ92526 530 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 ARL8AQ96BM9 186 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 SEC16BQ96JE7 1060 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 ZIM3Q96PE6 472 aa13.14□□□□□ -0.31
HDAC3-213ENST00000492506 TRAPPC9Q96Q05 1148 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms