RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 PLIN5Q00G26 463 aa6.23□□□□□ -1.41
VPS13D-209ENST00000487188 POU6F1Q14863 301 aa6.23□□□□□ -1.41
VPS13D-209ENST00000487188 ARMC4Q5T2S8 1044 aa6.23□□□□□ -1.41
VPS13D-209ENST00000487188 ZNF470Q6ECI4 717 aa6.23□□□□□ -1.41
VPS13D-209ENST00000487188 DENND5AQ6IQ26 1287 aa6.23□□□□□ -1.41
VPS13D-209ENST00000487188 SLC26A9Q7LBE3 791 aa6.23□□□□□ -1.41
VPS13D-209ENST00000487188 ZC3HC1Q86WB0 502 aaKnown RBP6.23□□□□□ -1.41
VPS13D-209ENST00000487188 DEPDC4Q8N2C3 294 aa6.23□□□□□ -1.41
VPS13D-209ENST00000487188 PELI3Q8N2H9 469 aa6.23□□□□□ -1.41
VPS13D-209ENST00000487188 AMER2Q8N7J2 671 aa6.23□□□□□ -1.41
VPS13D-209ENST00000487188 RNF149Q8NC42 400 aa6.23□□□□□ -1.41
VPS13D-209ENST00000487188 SETD9Q8NE22 299 aa6.23□□□□□ -1.41
VPS13D-209ENST00000487188 HEXDCQ8WVB3 486 aa6.23□□□□□ -1.41
VPS13D-209ENST00000487188 LRCH3Q96II8 777 aa6.23□□□□□ -1.41
VPS13D-209ENST00000487188 SLC30A3Q99726 388 aa6.23□□□□□ -1.41
VPS13D-209ENST00000487188 EMILIN2Q9BXX0 1053 aa6.23□□□□□ -1.41
VPS13D-209ENST00000487188 DCSTAMPQ9H295 470 aa6.23□□□□□ -1.41
VPS13D-209ENST00000487188 RIBC2Q9H4K1 309 aa6.23□□□□□ -1.41
VPS13D-209ENST00000487188 MEAF6Q9HAF1 191 aa6.23□□□□□ -1.41
VPS13D-209ENST00000487188 PXMP2Q9NR77 195 aa6.23□□□□□ -1.41
VPS13D-209ENST00000487188 PAK1IP1Q9NWT1 392 aaPredicted RBP6.23□□□□□ -1.41
VPS13D-209ENST00000487188 CMTM6Q9NX76 183 aa6.23□□□□□ -1.41
VPS13D-209ENST00000487188 NUDT5Q9UKK9 219 aa6.23□□□□□ -1.41
VPS13D-209ENST00000487188 EIF3LQ9Y262 564 aaKnown RBP6.23□□□□□ -1.41
VPS13D-209ENST00000487188 CCDC154A6NI56 674 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 TTC34A8MYJ7 566 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 EFCAB9A8MZ26 197 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 UBXN8O00124 270 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 ALX3O95076 343 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 AP2A1O95782 977 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 SLC35E2BP0CK96 405 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 HGFP14210 728 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 AGXTP21549 392 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 ADORA2BP29275 332 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 ARPP19P56211 112 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 CDH17Q12864 832 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 DPYSL2Q16555 572 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 TJAP1Q5JTD0 557 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 CEP78Q5JTW2 689 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 XAF1Q6GPH4 301 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 GLYATQ6IB77 296 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 ZPBP2Q6X784 338 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 RETREG3Q86VR2 466 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 PROSER1Q86XN7 944 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 GALNT13Q8IUC8 556 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 EID3Q8N140 333 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 PYROXD2Q8N2H3 581 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 MFSD4AQ8N468 514 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 NSUN6Q8TEA1 469 aaKnown RBP6.22□□□□□ -1.41
VPS13D-209ENST00000487188 SEPT1Q8WYJ6 367 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 TRIB2Q92519 343 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 FAM162AQ96A26 154 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 ISL2Q96A47 359 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 BIRC7Q96CA5 298 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 GPRASP2Q96D09 838 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 TSPAN17Q96FV3 270 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 HPDLQ96IR7 371 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 FEM1AQ9BSK4 669 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 IDI2Q9BXS1 227 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 TRIM54Q9BYV2 358 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 SMURF2Q9HAU4 748 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 PTPRHQ9HD43 1115 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 MID1IP1Q9NPA3 183 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 PAQR5Q9NXK6 330 aaPredicted RBP6.22□□□□□ -1.41
VPS13D-209ENST00000487188 GIMAP2Q9UG22 337 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 LOC100506127A0A0U1RQW1 187 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 PNMA8CA0A1B0GUJ8 204 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 TYW5A2RUC4 315 aaKnown RBP6.22□□□□□ -1.41
VPS13D-209ENST00000487188 SLC1A7O00341 560 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 BCKDKO14874 412 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 XPNPEP2O43895 674 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 CST1P01037 141 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 PIGRP01833 764 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 MYL3P08590 195 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 MYCLP1P12525 358 aaPredicted RBP6.22□□□□□ -1.41
VPS13D-209ENST00000487188 PRKCAP17252 672 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 DDX5P17844 614 aaKnown RBP6.22□□□□□ -1.41
VPS13D-209ENST00000487188 BMPR1AP36894 532 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 EIF2DP41214 584 aaKnown RBP6.22□□□□□ -1.41
VPS13D-209ENST00000487188 MAP2K4P45985 399 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 BCAT1P54687 386 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 CDH13P55290 713 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 RACK1P63244 317 aaKnown RBP6.22□□□□□ -1.41
VPS13D-209ENST00000487188 CD47Q08722 323 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 CDC20Q12834 499 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 BAATQ14032 418 aaPredicted RBP6.22□□□□□ -1.41
VPS13D-209ENST00000487188 ZNF404Q494X3 552 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 GTF2IRD2BQ6EKJ0 949 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 TRNP1Q6NT89 227 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 GTF2IRD2Q86UP8 949 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 LYSMD2Q8IV50 215 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 ZNF540Q8NDQ6 660 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 IPMKQ8NFU5 416 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 RHOXF1Q8NHV9 184 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 RNF139Q8WU17 664 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 PHF10Q8WUB8 498 aaKnown RBP6.22□□□□□ -1.41
VPS13D-209ENST00000487188 SLC22A17Q8WUG5 538 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 STON2Q8WXE9 905 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 TTYH2Q9BSA4 534 aa6.22□□□□□ -1.41
VPS13D-209ENST00000487188 CENPOQ9BU64 300 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms