RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 PDCD2Q16342 344 aaPredicted RBP4.9□□□□□ -1.63
VPS50-214ENST00000477935 N4BP2L1Q5TBK1 243 aaPredicted RBP4.9□□□□□ -1.63
VPS50-214ENST00000477935 C9orf47Q6ZRZ4 202 aa4.9□□□□□ -1.63
VPS50-214ENST00000477935 RNF144BQ7Z419 303 aa4.9□□□□□ -1.63
VPS50-214ENST00000477935 SERINC5Q86VE9 423 aa4.9□□□□□ -1.63
VPS50-214ENST00000477935 CCDC25Q86WR0 208 aa4.9□□□□□ -1.63
VPS50-214ENST00000477935 WDR63Q8IWG1 891 aa4.9□□□□□ -1.63
VPS50-214ENST00000477935 SCN4BQ8IWT1 228 aa4.9□□□□□ -1.63
VPS50-214ENST00000477935 VPS52Q8N1B4 723 aa4.9□□□□□ -1.63
VPS50-214ENST00000477935 GALNT15Q8N3T1 639 aa4.9□□□□□ -1.63
VPS50-214ENST00000477935 TMEM217Q8N7C4 229 aa4.9□□□□□ -1.63
VPS50-214ENST00000477935 FSIP1Q8NA03 581 aa4.9□□□□□ -1.63
VPS50-214ENST00000477935 ZBTB44Q8NCP5 570 aa4.9□□□□□ -1.63
VPS50-214ENST00000477935 CSGALNACT1Q8TDX6 532 aa4.9□□□□□ -1.63
VPS50-214ENST00000477935 CHURC1Q8WUH1 139 aa4.9□□□□□ -1.63
VPS50-214ENST00000477935 CASP10Q92851 521 aa4.9□□□□□ -1.63
VPS50-214ENST00000477935 LDHAL6BQ9BYZ2 381 aaPredicted RBP4.9□□□□□ -1.63
VPS50-214ENST00000477935 PTPRHQ9HD43 1115 aa4.9□□□□□ -1.63
VPS50-214ENST00000477935 SAYSD1Q9NPB0 183 aa4.9□□□□□ -1.63
VPS50-214ENST00000477935 PNRC2Q9NPJ4 139 aaKnown RBP4.9□□□□□ -1.63
VPS50-214ENST00000477935 G6PC2Q9NQR9 355 aa4.9□□□□□ -1.63
VPS50-214ENST00000477935 RNF146Q9NTX7 359 aa4.9□□□□□ -1.63
VPS50-214ENST00000477935 TMEM248Q9NWD8 314 aa4.9□□□□□ -1.63
VPS50-214ENST00000477935 NYAP2Q9P242 653 aa4.9□□□□□ -1.63
VPS50-214ENST00000477935 HDAC6Q9UBN7 1215 aa4.9□□□□□ -1.63
VPS50-214ENST00000477935 RAB23Q9ULC3 237 aa4.9□□□□□ -1.63
VPS50-214ENST00000477935 PA2G4Q9UQ80 394 aaKnown RBP4.9□□□□□ -1.63
VPS50-214ENST00000477935 PTPRCP08575 1304 aa4.9□□□□□ -1.63
VPS50-214ENST00000477935 DSPP15924 2871 aaKnown RBP4.9□□□□□ -1.63
VPS50-214ENST00000477935 MICAL3Q7RTP6 2002 aa4.89□□□□□ -1.63
VPS50-214ENST00000477935 MYO18BQ8IUG5 2567 aa4.89□□□□□ -1.63
VPS50-214ENST00000477935 TRBV5-7A0A0A0MS05 114 aa4.89□□□□□ -1.63
VPS50-214ENST00000477935 EIF4E1BA6NMX2 242 aaKnown RBP4.89□□□□□ -1.63
VPS50-214ENST00000477935 SRRM3A6NNA2 597 aaPredicted RBP4.89□□□□□ -1.63
VPS50-214ENST00000477935 IDH1O75874 414 aaKnown RBP4.89□□□□□ -1.63
VPS50-214ENST00000477935 KRT38O76015 456 aa4.89□□□□□ -1.63
VPS50-214ENST00000477935 NDUFB10O96000 172 aa4.89□□□□□ -1.63
VPS50-214ENST00000477935 IFNA2P01563 188 aa4.89□□□□□ -1.63
VPS50-214ENST00000477935 RETP07949 1114 aa4.89□□□□□ -1.63
VPS50-214ENST00000477935 SNHG28P0DPA3 235 aa4.89□□□□□ -1.63
VPS50-214ENST00000477935 SP100P23497 879 aaPredicted RBP4.89□□□□□ -1.63
VPS50-214ENST00000477935 GSTM2P28161 218 aa4.89□□□□□ -1.63
VPS50-214ENST00000477935 TYK2P29597 1187 aa4.89□□□□□ -1.63
VPS50-214ENST00000477935 MAGEA9P43362 315 aa4.89□□□□□ -1.63
VPS50-214ENST00000477935 CUL4BQ13620 913 aa4.89□□□□□ -1.63
VPS50-214ENST00000477935 POSTNQ15063 836 aa4.89□□□□□ -1.63
VPS50-214ENST00000477935 PLK5Q496M5 336 aa4.89□□□□□ -1.63
VPS50-214ENST00000477935 GXYLT1Q4G148 440 aa4.89□□□□□ -1.63
VPS50-214ENST00000477935 LCE1AQ5T7P2 110 aa4.89□□□□□ -1.63
VPS50-214ENST00000477935 ZNF549Q6P9A3 640 aa4.89□□□□□ -1.63
VPS50-214ENST00000477935 AAGABQ6PD74 315 aa4.89□□□□□ -1.63
VPS50-214ENST00000477935 RASGRP2Q7LDG7 609 aa4.89□□□□□ -1.63
VPS50-214ENST00000477935 FAM160B2Q86V87 743 aa4.89□□□□□ -1.63
VPS50-214ENST00000477935 LURAP1LQ8IV03 231 aa4.89□□□□□ -1.63
VPS50-214ENST00000477935 SAMD14Q8IZD0 417 aaPredicted RBP4.89□□□□□ -1.63
VPS50-214ENST00000477935 VN1R2Q8NFZ6 395 aa4.89□□□□□ -1.63
VPS50-214ENST00000477935 TRAPPC12Q8WVT3 735 aa4.89□□□□□ -1.63
VPS50-214ENST00000477935 GOLGA1Q92805 767 aa4.89□□□□□ -1.63
VPS50-214ENST00000477935 NAF1Q96HR8 494 aaKnown RBP4.89□□□□□ -1.63
VPS50-214ENST00000477935 CAMK1GQ96NX5 476 aa4.89□□□□□ -1.63
VPS50-214ENST00000477935 RIOK1Q9BRS2 568 aaKnown RBP4.89□□□□□ -1.63
VPS50-214ENST00000477935 POMKQ9H5K3 350 aa4.89□□□□□ -1.63
VPS50-214ENST00000477935 PLEKHA2Q9HB19 425 aa4.89□□□□□ -1.63
VPS50-214ENST00000477935 Q9N2J8 555 aa4.89□□□□□ -1.63
VPS50-214ENST00000477935 DLGAP2Q9P1A6 1054 aa4.89□□□□□ -1.63
VPS50-214ENST00000477935 PNMA2Q9UL42 364 aa4.89□□□□□ -1.63
VPS50-214ENST00000477935 IGF2RP11717 2491 aa4.89□□□□□ -1.63
VPS50-214ENST00000477935 PTPRSQ13332 1948 aa4.89□□□□□ -1.63
VPS50-214ENST00000477935 TANC1Q9C0D5 1861 aa4.88□□□□□ -1.63
VPS50-214ENST00000477935 LAMA5O15230 3695 aa4.88□□□□□ -1.63
VPS50-214ENST00000477935 HAS3O00219 553 aa4.88□□□□□ -1.63
VPS50-214ENST00000477935 FAM155BO75949 473 aa4.88□□□□□ -1.63
VPS50-214ENST00000477935 CSPG5O95196 566 aa4.88□□□□□ -1.63
VPS50-214ENST00000477935 GH1P01241 217 aa4.88□□□□□ -1.63
VPS50-214ENST00000477935 STAG3L1P0CL83 205 aa4.88□□□□□ -1.63
VPS50-214ENST00000477935 ACP5P13686 325 aa4.88□□□□□ -1.63
VPS50-214ENST00000477935 KLRC2P26717 231 aa4.88□□□□□ -1.63
VPS50-214ENST00000477935 SLC16A2P36021 539 aa4.88□□□□□ -1.63
VPS50-214ENST00000477935 MCM2P49736 904 aa4.88□□□□□ -1.63
VPS50-214ENST00000477935 CYP2J2P51589 502 aa4.88□□□□□ -1.63
VPS50-214ENST00000477935 STAT2P52630 851 aa4.88□□□□□ -1.63
VPS50-214ENST00000477935 LIMK1P53667 647 aa4.88□□□□□ -1.63
VPS50-214ENST00000477935 P2RX3P56373 397 aa4.88□□□□□ -1.63
VPS50-214ENST00000477935 G3BP1Q13283 466 aaKnown RBP eCLIP4.88□□□□□ -1.63
VPS50-214ENST00000477935 C5orf22Q49AR2 442 aa4.88□□□□□ -1.63
VPS50-214ENST00000477935 SOWAHCQ53LP3 525 aaPredicted RBP4.88□□□□□ -1.63
VPS50-214ENST00000477935 SPECC1Q5M775 1068 aa4.88□□□□□ -1.63
VPS50-214ENST00000477935 VWA5B1Q5TIE3 1220 aa4.88□□□□□ -1.63
VPS50-214ENST00000477935 FAM171A1Q5VUB5 890 aa4.88□□□□□ -1.63
VPS50-214ENST00000477935 ZNF517Q6ZMY9 492 aaPredicted RBP4.88□□□□□ -1.63
VPS50-214ENST00000477935 IGFN1Q86VF2 1251 aa4.88□□□□□ -1.63
VPS50-214ENST00000477935 SLC25A41Q8N5S1 370 aa4.88□□□□□ -1.63
VPS50-214ENST00000477935 GMCL1P1Q8NEA9 526 aa4.88□□□□□ -1.63
VPS50-214ENST00000477935 CMASQ8NFW8 434 aaPredicted RBP4.88□□□□□ -1.63
VPS50-214ENST00000477935 C2CD4CQ8TF44 421 aa4.88□□□□□ -1.63
VPS50-214ENST00000477935 THAP4Q8WY91 577 aa4.88□□□□□ -1.63
VPS50-214ENST00000477935 INPP5DQ92835 1189 aa4.88□□□□□ -1.63
VPS50-214ENST00000477935 MAF1Q9H063 256 aa4.88□□□□□ -1.63
VPS50-214ENST00000477935 ACTR5Q9H9F9 607 aaPredicted RBP4.88□□□□□ -1.63
VPS50-214ENST00000477935 TBC1D17Q9HA65 648 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms