RNA–Protein interactions for RNA: ENST00000477461.1

UBR3-209, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 4

Gene UBR3, Length 595 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-209ENST00000477461 PDP2Q9P2J9 529 aa4.18□□□□□ -1.74
UBR3-209ENST00000477461 SUFUQ9UMX1 484 aa4.18□□□□□ -1.74
UBR3-209ENST00000477461 CLDN16Q9Y5I7 305 aa4.18□□□□□ -1.74
UBR3-209ENST00000477461 DDX60Q8IY21 1712 aaKnown RBP4.18□□□□□ -1.74
UBR3-209ENST00000477461 H0YIN7 160 aa4.17□□□□□ -1.74
UBR3-209ENST00000477461 TIMM23O14925 209 aa4.17□□□□□ -1.74
UBR3-209ENST00000477461 NCAM2O15394 837 aa4.17□□□□□ -1.74
UBR3-209ENST00000477461 SLC25A17O43808 307 aa4.17□□□□□ -1.74
UBR3-209ENST00000477461 KIF1CO43896 1103 aaKnown RBP4.17□□□□□ -1.74
UBR3-209ENST00000477461 CGAP01215 116 aa4.17□□□□□ -1.74
UBR3-209ENST00000477461 IL1AP01583 271 aa4.17□□□□□ -1.74
UBR3-209ENST00000477461 SP1P08047 785 aa4.17□□□□□ -1.74
UBR3-209ENST00000477461 KRT10P13645 584 aa4.17□□□□□ -1.74
UBR3-209ENST00000477461 CD72P21854 359 aa4.17□□□□□ -1.74
UBR3-209ENST00000477461 HNF1BP35680 557 aa4.17□□□□□ -1.74
UBR3-209ENST00000477461 PEX5P50542 639 aa4.17□□□□□ -1.74
UBR3-209ENST00000477461 CCR5P51681 352 aa4.17□□□□□ -1.74
UBR3-209ENST00000477461 KHDRBS1Q07666 443 aaKnown RBP eCLIP4.17□□□□□ -1.74
UBR3-209ENST00000477461 ST3GAL1Q11201 340 aa4.17□□□□□ -1.74
UBR3-209ENST00000477461 DLG1Q12959 904 aa4.17□□□□□ -1.74
UBR3-209ENST00000477461 G3BP1Q13283 466 aaKnown RBP eCLIP4.17□□□□□ -1.74
UBR3-209ENST00000477461 SLC12A1Q13621 1099 aa4.17□□□□□ -1.74
UBR3-209ENST00000477461 DHX34Q14147 1143 aaKnown RBP4.17□□□□□ -1.74
UBR3-209ENST00000477461 HSP90AB4PQ58FF6 505 aa4.17□□□□□ -1.74
UBR3-209ENST00000477461 EFHC1Q5JVL4 640 aa4.17□□□□□ -1.74
UBR3-209ENST00000477461 SLC10A5Q5PT55 438 aa4.17□□□□□ -1.74
UBR3-209ENST00000477461 NAA35Q5VZE5 725 aa4.17□□□□□ -1.74
UBR3-209ENST00000477461 ZNF449Q6P9G9 518 aa4.17□□□□□ -1.74
UBR3-209ENST00000477461 ZNF114Q8NC26 417 aa4.17□□□□□ -1.74
UBR3-209ENST00000477461 TBC1D22AQ8WUA7 517 aa4.17□□□□□ -1.74
UBR3-209ENST00000477461 SCMH1Q96GD3 660 aa4.17□□□□□ -1.74
UBR3-209ENST00000477461 TBATAQ96M53 351 aa4.17□□□□□ -1.74
UBR3-209ENST00000477461 MPHOSPH8Q99549 860 aa4.17□□□□□ -1.74
UBR3-209ENST00000477461 TMX4Q9H1E5 349 aaPredicted RBP4.17□□□□□ -1.74
UBR3-209ENST00000477461 TAOK3Q9H2K8 898 aa4.17□□□□□ -1.74
UBR3-209ENST00000477461 MVB12BQ9H7P6 319 aa4.17□□□□□ -1.74
UBR3-209ENST00000477461 WDR6Q9NNW5 1121 aaKnown RBP4.17□□□□□ -1.74
UBR3-209ENST00000477461 TMEM51Q9NW97 253 aa4.17□□□□□ -1.74
UBR3-209ENST00000477461 SAGE1Q9NXZ1 904 aa4.17□□□□□ -1.74
UBR3-209ENST00000477461 GRHL1Q9NZI5 618 aa4.17□□□□□ -1.74
UBR3-209ENST00000477461 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.17□□□□□ -1.74
UBR3-209ENST00000477461 RIC1Q4ADV7 1423 aa4.17□□□□□ -1.74
UBR3-209ENST00000477461 NRXN2Q9P2S2 1712 aa4.17□□□□□ -1.74
UBR3-209ENST00000477461 SPEF2Q9C093 1822 aa4.16□□□□□ -1.74
UBR3-209ENST00000477461 ABCC12Q96J65 1359 aa4.16□□□□□ -1.74
UBR3-209ENST00000477461 CACNA1SQ13698 1873 aa4.16□□□□□ -1.74
UBR3-209ENST00000477461 ANKRD31Q8N7Z5 1873 aa4.16□□□□□ -1.74
UBR3-209ENST00000477461 GOLGA6L10A0A0M3HER8 536 aa4.16□□□□□ -1.74
UBR3-209ENST00000477461 OR6C68A6NDL8 312 aa4.16□□□□□ -1.74
UBR3-209ENST00000477461 FAM90A7PA6NKC0 464 aa4.16□□□□□ -1.74
UBR3-209ENST00000477461 FAM90A22PA8MWA6 464 aa4.16□□□□□ -1.74
UBR3-209ENST00000477461 FAM90A12PA8MX19 464 aa4.16□□□□□ -1.74
UBR3-209ENST00000477461 FAM90A23PA8MXZ1 464 aa4.16□□□□□ -1.74
UBR3-209ENST00000477461 J3KR12 359 aa4.16□□□□□ -1.74
UBR3-209ENST00000477461 HOXC11O43248 304 aaPredicted RBP4.16□□□□□ -1.74
UBR3-209ENST00000477461 XPNPEP2O43895 674 aa4.16□□□□□ -1.74
UBR3-209ENST00000477461 SURF6O75683 361 aaKnown RBP4.16□□□□□ -1.74
UBR3-209ENST00000477461 CH25HO95992 272 aa4.16□□□□□ -1.74
UBR3-209ENST00000477461 YWHAQP27348 245 aa4.16□□□□□ -1.74
UBR3-209ENST00000477461 ALDH1B1P30837 517 aa4.16□□□□□ -1.74
UBR3-209ENST00000477461 SSTR2P30874 369 aa4.16□□□□□ -1.74
UBR3-209ENST00000477461 ARL16Q0P5N6 197 aa4.16□□□□□ -1.74
UBR3-209ENST00000477461 IL13RA2Q14627 380 aa4.16□□□□□ -1.74
UBR3-209ENST00000477461 RPE65Q16518 533 aa4.16□□□□□ -1.74
UBR3-209ENST00000477461 MRGPRG-AS1Q2M3A8 158 aa4.16□□□□□ -1.74
UBR3-209ENST00000477461 RABL6Q3YEC7 729 aaPredicted RBP4.16□□□□□ -1.74
UBR3-209ENST00000477461 STPG1Q5TH74 334 aa4.16□□□□□ -1.74
UBR3-209ENST00000477461 CENPQQ7L2Z9 268 aaPredicted RBP4.16□□□□□ -1.74
UBR3-209ENST00000477461 TMC8Q8IU68 726 aa4.16□□□□□ -1.74
UBR3-209ENST00000477461 ERC1Q8IUD2 1116 aa4.16□□□□□ -1.74
UBR3-209ENST00000477461 SETD9Q8NE22 299 aa4.16□□□□□ -1.74
UBR3-209ENST00000477461 ZNF622Q969S3 477 aaKnown RBP eCLIP4.16□□□□□ -1.749e-10■■□□□ 12.8
UBR3-209ENST00000477461 RNFT2Q96EX2 444 aa4.16□□□□□ -1.74
UBR3-209ENST00000477461 SIL1Q9H173 461 aa4.16□□□□□ -1.74
UBR3-209ENST00000477461 STN1Q9H668 368 aaKnown RBP4.16□□□□□ -1.74
UBR3-209ENST00000477461 SLC13A4Q9UKG4 626 aa4.16□□□□□ -1.74
UBR3-209ENST00000477461 NFS1Q9Y697 457 aa4.16□□□□□ -1.74
UBR3-209ENST00000477461 NOTCH3Q9UM47 2321 aa4.16□□□□□ -1.74
UBR3-209ENST00000477461 TNRC6CQ9HCJ0 1690 aaKnown RBP4.16□□□□□ -1.74
UBR3-209ENST00000477461 RTL9Q8NET4 1388 aa4.15□□□□□ -1.74
UBR3-209ENST00000477461 GREB1LQ9C091 1923 aaPredicted RBP4.15□□□□□ -1.74
UBR3-209ENST00000477461 C10orf71Q711Q0 1435 aa4.15□□□□□ -1.74
UBR3-209ENST00000477461 A0A096LPK6 155 aa4.15□□□□□ -1.75
UBR3-209ENST00000477461 SH2D7A6NKC9 451 aaPredicted RBP4.15□□□□□ -1.75
UBR3-209ENST00000477461 FAM157AC9JC47 383 aa4.15□□□□□ -1.75
UBR3-209ENST00000477461 TULP2O00295 520 aa4.15□□□□□ -1.75
UBR3-209ENST00000477461 KLK10O43240 276 aa4.15□□□□□ -1.75
UBR3-209ENST00000477461 HBP1O60381 514 aa4.15□□□□□ -1.75
UBR3-209ENST00000477461 CHRM4P08173 479 aa4.15□□□□□ -1.75
UBR3-209ENST00000477461 PSMC2P35998 433 aaKnown RBP4.15□□□□□ -1.75
UBR3-209ENST00000477461 IL15P40933 162 aaPredicted RBP4.15□□□□□ -1.75
UBR3-209ENST00000477461 GPD2P43304 727 aa4.15□□□□□ -1.75
UBR3-209ENST00000477461 RPS8P62241 208 aaKnown RBP4.15□□□□□ -1.75
UBR3-209ENST00000477461 GRAPQ13588 217 aa4.15□□□□□ -1.75
UBR3-209ENST00000477461 FBXO43Q4G163 708 aa4.15□□□□□ -1.75
UBR3-209ENST00000477461 ATG16L1Q676U5 607 aa4.15□□□□□ -1.75
UBR3-209ENST00000477461 NCAPH2Q6IBW4 605 aa4.15□□□□□ -1.75
UBR3-209ENST00000477461 PATL1Q86TB9 770 aaKnown RBP4.15□□□□□ -1.75
UBR3-209ENST00000477461 LSM14AQ8ND56 463 aaKnown RBP4.15□□□□□ -1.75
UBR3-209ENST00000477461 GRAPLQ8TC17 118 aaPredicted RBP4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms