RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 SYN2Q92777 582 aaPredicted RBP6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 KLHL32Q96NJ5 620 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 LENG8Q96PV6 779 aaPredicted RBP6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 PEBP4Q96S96 227 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 SNRNP25Q9BV90 132 aaKnown RBP6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 CALN1Q9BXU9 219 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 SLC17A9Q9BYT1 436 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 KLC2Q9H0B6 622 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 ISCUQ9H1K1 167 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 C12orf49Q9H741 205 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 LRRC19Q9H756 370 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 KLHL11Q9NVR0 708 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 GPATCH2LQ9NWQ4 482 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 MYO1AQ9UBC5 1043 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 UBA2Q9UBT2 640 aaPredicted RBP6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 PCSK1NQ9UHG2 260 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 ADAM30Q9UKF2 790 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 MFHAS1Q9Y4C4 1052 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 HS3ST3A1Q9Y663 406 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 ASPMQ8IZT6 3477 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 IGF2RP11717 2491 aa6.87□□□□□ -1.31
CCDC88A-213ENST00000476903 IGLON5A6NGN9 336 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 FPGTO14772 594 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 PRAMEF11O60813 436 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 SDC3O75056 442 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 LRCH4O75427 683 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 PAK4O96013 591 aaPredicted RBP6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 SERPING1P05155 500 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 TPM3P06753 285 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 C1SP09871 688 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 CKMT2P17540 419 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 ERCC2P18074 760 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 XPAP23025 273 aaPredicted RBP6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 DGKAP23743 735 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 PCK1P35558 622 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 HNF1BP35680 557 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 PBX1P40424 430 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 RABIFP47224 123 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 HCAR3P49019 387 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 ACADVLP49748 655 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 PAPOLAP51003 745 aaKnown RBP6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 SUOXP51687 545 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 ZBED6P86452 979 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 FGL2Q14314 439 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 PIGHQ14442 188 aaPredicted RBP6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 CYTH1Q15438 398 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 SMAD1Q15797 465 aaKnown RBP6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 CA9Q16790 459 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 ZSCAN23Q3MJ62 389 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 PPP6R3Q5H9R7 873 aaPredicted RBP6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 CFAP58Q5T655 872 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 DHRS13Q6UX07 377 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 CYP4V2Q6ZWL3 525 aaPredicted RBP6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 KANSL1Q7Z3B3 1105 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 TTC7BQ86TV6 843 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 TMPRSS12Q86WS5 348 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 SLC22A18ASQ8N1D0 253 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 ARFGAP1Q8N6T3 406 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 DENND6BQ8NEG7 585 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 CXorf40AQ8TE69 158 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 ASB12Q8WXK4 309 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 CELF6Q96J87 481 aaKnown RBP6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 TUBGCP5Q96RT8 1024 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 C1QTNF7Q9BXJ2 289 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 CPEB1Q9BZB8 566 aaKnown RBP6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 TRIM7Q9C029 511 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 SLC39A8Q9C0K1 460 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 ZWILCHQ9H900 591 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 PDFQ9HBH1 243 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 LUC7LQ9NQ29 371 aaKnown RBP6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 GPR27Q9NS67 375 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 DKK3Q9UBP4 350 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 LHX3Q9UBR4 397 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 FAM8A1Q9UBU6 413 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 GGT7Q9UJ14 662 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 CAPN11Q9UMQ6 739 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 ITM2BQ9Y287 266 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 LUC7L2Q9Y383 392 aaKnown RBP6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 LRP4O75096 1905 aa6.86□□□□□ -1.31
CCDC88A-213ENST00000476903 ACACAQ13085 2346 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 SPTY2D1-AS1A0A0U1RR47 76 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 POM121BA6NF01 834 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 NEMP2A6NFY4 417 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 SRRM3A6NNA2 597 aaPredicted RBP6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 J3KR12 359 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 DFFAO00273 331 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 TOR1BO14657 336 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 AREL1O15033 823 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 RAD51BO15315 384 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 INSIG1O15503 277 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 PALMO75781 387 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 PIAS2O75928 621 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 TM7SF2O76062 418 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 PIGNO95427 931 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 ALPPL2P10696 532 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 ACP1P24666 158 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 ARL4AP40617 200 aa6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 HNRNPKP61978 463 aaKnown RBP eCLIP6.85□□□□□ -1.31
CCDC88A-213ENST00000476903 ELP6Q0PNE2 266 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms