RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 HLA-DPA1P20036 260 aa18.83■□□□□ 0.6
PTCD3-210ENST00000473829 ADRA1AP35348 466 aa18.83■□□□□ 0.6
PTCD3-210ENST00000473829 ELOCQ15369 112 aa18.83■□□□□ 0.6
PTCD3-210ENST00000473829 SIX1Q15475 284 aaPredicted RBP18.83■□□□□ 0.6
PTCD3-210ENST00000473829 C6orf132Q5T0Z8 1188 aa18.83■□□□□ 0.6
PTCD3-210ENST00000473829 CCDC70Q6NSX1 233 aa18.83■□□□□ 0.6
PTCD3-210ENST00000473829 REXO1L1PQ8IX06 675 aa18.83■□□□□ 0.6
PTCD3-210ENST00000473829 SLC35F3Q8IY50 421 aa18.83■□□□□ 0.6
PTCD3-210ENST00000473829 TTC30BQ8N4P2 665 aa18.83■□□□□ 0.6
PTCD3-210ENST00000473829 HIC2Q96JB3 615 aa18.83■□□□□ 0.6
PTCD3-210ENST00000473829 APOL2Q9BQE5 337 aa18.83■□□□□ 0.6
PTCD3-210ENST00000473829 BOCQ9BWV1 1114 aa18.83■□□□□ 0.6
PTCD3-210ENST00000473829 FSD1LQ9BXM9 530 aa18.83■□□□□ 0.6
PTCD3-210ENST00000473829 TMEM121BQ9BXQ6 578 aaPredicted RBP18.83■□□□□ 0.6
PTCD3-210ENST00000473829 CARS2Q9HA77 564 aaKnown RBP18.83■□□□□ 0.6
PTCD3-210ENST00000473829 SUFUQ9UMX1 484 aa18.83■□□□□ 0.6
PTCD3-210ENST00000473829 NEUROG3Q9Y4Z2 214 aa18.83■□□□□ 0.6
PTCD3-210ENST00000473829 OAS3Q9Y6K5 1087 aaKnown RBP18.83■□□□□ 0.6
PTCD3-210ENST00000473829 ZNF106Q9H2Y7 1883 aaKnown RBP18.82■□□□□ 0.6
PTCD3-210ENST00000473829 RGSL1A5PLK6 1076 aa18.82■□□□□ 0.6
PTCD3-210ENST00000473829 METTL18O95568 372 aa18.82■□□□□ 0.6
PTCD3-210ENST00000473829 BPIP17213 487 aa18.82■□□□□ 0.6
PTCD3-210ENST00000473829 DCDC1P59894 354 aa18.82■□□□□ 0.6
PTCD3-210ENST00000473829 OASLQ15646 514 aaKnown RBP18.82■□□□□ 0.6
PTCD3-210ENST00000473829 SMAD1Q15797 465 aaKnown RBP18.82■□□□□ 0.6
PTCD3-210ENST00000473829 GUSBP11Q6P575 273 aa18.82■□□□□ 0.6
PTCD3-210ENST00000473829 SFTPA2Q8IWL1 248 aa18.82■□□□□ 0.6
PTCD3-210ENST00000473829 KLHDC8BQ8IXV7 354 aa18.82■□□□□ 0.6
PTCD3-210ENST00000473829 C1orf54Q8WWF1 131 aa18.82■□□□□ 0.6
PTCD3-210ENST00000473829 BPIFA1Q9NP55 256 aa18.82■□□□□ 0.6
PTCD3-210ENST00000473829 NFKBIL1Q9UBC1 381 aaPredicted RBP18.82■□□□□ 0.6
PTCD3-210ENST00000473829 PCYT1BQ9Y5K3 369 aaPredicted RBP18.82■□□□□ 0.6
PTCD3-210ENST00000473829 ST14Q9Y5Y6 855 aa18.82■□□□□ 0.6
PTCD3-210ENST00000473829 COL27A1Q8IZC6 1860 aaPredicted RBP18.82■□□□□ 0.6
PTCD3-210ENST00000473829 FAM221BA6H8Z2 402 aa18.81■□□□□ 0.6
PTCD3-210ENST00000473829 ATP1A1P05023 1023 aaKnown RBP18.81■□□□□ 0.6
PTCD3-210ENST00000473829 FGF1P05230 155 aa18.81■□□□□ 0.6
PTCD3-210ENST00000473829 PYGLP06737 847 aa18.81■□□□□ 0.6
PTCD3-210ENST00000473829 IVLP07476 585 aa18.81■□□□□ 0.6
PTCD3-210ENST00000473829 GNPDA1P46926 289 aa18.81■□□□□ 0.6
PTCD3-210ENST00000473829 RANBP10Q6VN20 620 aa18.81■□□□□ 0.6
PTCD3-210ENST00000473829 TMPRSS7Q7RTY8 843 aa18.81■□□□□ 0.6
PTCD3-210ENST00000473829 NRROSQ86YC3 692 aa18.81■□□□□ 0.6
PTCD3-210ENST00000473829 KYQ8NBH2 561 aa18.81■□□□□ 0.6
PTCD3-210ENST00000473829 BLOC1S5Q8TDH9 187 aa18.81■□□□□ 0.6
PTCD3-210ENST00000473829 RTP4Q96DX8 246 aa18.81■□□□□ 0.6
PTCD3-210ENST00000473829 SCARF2Q96GP6 870 aaPredicted RBP18.81■□□□□ 0.6
PTCD3-210ENST00000473829 CNTNAP3BQ96NU0 1288 aa18.81■□□□□ 0.6
PTCD3-210ENST00000473829 CNTNAP3Q9BZ76 1288 aa18.81■□□□□ 0.6
PTCD3-210ENST00000473829 SIRPGQ9P1W8 387 aa18.81■□□□□ 0.6
PTCD3-210ENST00000473829 DOLKQ9UPQ8 538 aa18.81■□□□□ 0.6
PTCD3-210ENST00000473829 MSRB2Q9Y3D2 182 aa18.81■□□□□ 0.6
PTCD3-210ENST00000473829 ASXL3Q9C0F0 2248 aa18.8■□□□□ 0.6
PTCD3-210ENST00000473829 FAM149AA5PLN7 773 aa18.8■□□□□ 0.6
PTCD3-210ENST00000473829 BUD23O43709 281 aaKnown RBP18.8■□□□□ 0.6
PTCD3-210ENST00000473829 USP12O75317 370 aa18.8■□□□□ 0.6
PTCD3-210ENST00000473829 ZNF189O75820 626 aaPredicted RBP18.8■□□□□ 0.6
PTCD3-210ENST00000473829 CXCR5P32302 372 aa18.8■□□□□ 0.6
PTCD3-210ENST00000473829 HMGCLP35914 325 aa18.8■□□□□ 0.6
PTCD3-210ENST00000473829 TNNT3P45378 269 aaPredicted RBP18.8■□□□□ 0.6
PTCD3-210ENST00000473829 ILKQ13418 452 aa18.8■□□□□ 0.6
PTCD3-210ENST00000473829 SNX1Q13596 522 aa18.8■□□□□ 0.6
PTCD3-210ENST00000473829 SPARCL1Q14515 664 aa18.8■□□□□ 0.6
PTCD3-210ENST00000473829 PRPSAP1Q14558 356 aa18.8■□□□□ 0.6
PTCD3-210ENST00000473829 KCTD11Q693B1 232 aa18.8■□□□□ 0.6
PTCD3-210ENST00000473829 DENND5AQ6IQ26 1287 aa18.8■□□□□ 0.6
PTCD3-210ENST00000473829 ARHGEF18Q6ZSZ5 1173 aa18.8■□□□□ 0.6
PTCD3-210ENST00000473829 MARK2Q7KZI7 788 aaKnown RBP18.8■□□□□ 0.6
PTCD3-210ENST00000473829 GLT6D1Q7Z4J2 308 aa18.8■□□□□ 0.6
PTCD3-210ENST00000473829 GKN2Q86XP6 184 aa18.8■□□□□ 0.6
PTCD3-210ENST00000473829 TAB3Q8N5C8 712 aaPredicted RBP18.8■□□□□ 0.6
PTCD3-210ENST00000473829 GATA6Q92908 595 aa18.8■□□□□ 0.6
PTCD3-210ENST00000473829 SRPK1Q96SB4 655 aaKnown RBP18.8■□□□□ 0.6
PTCD3-210ENST00000473829 SPATA16Q9BXB7 569 aa18.8■□□□□ 0.6
PTCD3-210ENST00000473829 TRABDQ9H4I3 376 aa18.8■□□□□ 0.6
PTCD3-210ENST00000473829 ARFGAP3Q9NP61 516 aa18.8■□□□□ 0.6
PTCD3-210ENST00000473829 GPR34Q9UPC5 381 aa18.8■□□□□ 0.6
PTCD3-210ENST00000473829 AAR2Q9Y312 384 aaKnown RBP18.8■□□□□ 0.6
PTCD3-210ENST00000473829 PLEKHM1Q9Y4G2 1056 aa18.8■□□□□ 0.6
PTCD3-210ENST00000473829 ARHGEF17Q96PE2 2063 aaPredicted RBP18.8■□□□□ 0.6
PTCD3-210ENST00000473829 ACACBO00763 2458 aa18.79■□□□□ 0.6
PTCD3-210ENST00000473829 ZFC3H1O60293 1989 aaKnown RBP18.79■□□□□ 0.6
PTCD3-210ENST00000473829 CASC3O15234 703 aaKnown RBP18.79■□□□□ 0.6
PTCD3-210ENST00000473829 AK4P27144 223 aaPredicted RBP18.79■□□□□ 0.6
PTCD3-210ENST00000473829 ADCY8P40145 1251 aa18.79■□□□□ 0.6
PTCD3-210ENST00000473829 INSM1Q01101 510 aaPredicted RBP18.79■□□□□ 0.6
PTCD3-210ENST00000473829 MSLNQ13421 630 aaPredicted RBP18.79■□□□□ 0.6
PTCD3-210ENST00000473829 PTPRCAPQ14761 206 aa18.79■□□□□ 0.6
PTCD3-210ENST00000473829 NR0B2Q15466 257 aa18.79■□□□□ 0.6
PTCD3-210ENST00000473829 PARP6Q2NL67 630 aa18.79■□□□□ 0.6
PTCD3-210ENST00000473829 ZNF648Q5T619 568 aaPredicted RBP18.79■□□□□ 0.6
PTCD3-210ENST00000473829 HES3Q5TGS1 186 aa18.79■□□□□ 0.6
PTCD3-210ENST00000473829 LVRNQ6Q4G3 990 aa18.79■□□□□ 0.6
PTCD3-210ENST00000473829 TAF8Q7Z7C8 310 aa18.79■□□□□ 0.6
PTCD3-210ENST00000473829 PRUNE1Q86TP1 453 aa18.79■□□□□ 0.6
PTCD3-210ENST00000473829 SDR16C5Q8N3Y7 309 aa18.79■□□□□ 0.6
PTCD3-210ENST00000473829 TRAM1L1Q8N609 369 aa18.79■□□□□ 0.6
PTCD3-210ENST00000473829 IFI44Q8TCB0 444 aa18.79■□□□□ 0.6
PTCD3-210ENST00000473829 GPBAR1Q8TDU6 330 aa18.79■□□□□ 0.6
PTCD3-210ENST00000473829 FRMD8P1Q9BZ68 369 aaPredicted RBP18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms