RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 POMPQ9Y244 141 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 TM7SF2O76062 418 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 CHEK2O96017 543 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 FGF1P05230 155 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 PYGLP06737 847 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 ARCN1P48444 511 aaKnown RBP13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 SLC7A2P52569 658 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 DIO3P55073 304 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 OR4D1Q15615 310 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 TMEM207Q6UWW9 146 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 LIMS2Q7Z4I7 341 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 ZBTB46Q86UZ6 589 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 RALGPS2Q86X27 583 aaPredicted RBP13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 OR10Q1Q8NGQ4 319 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 GBP5Q96PP8 586 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 CCDC106Q9BWC9 280 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 TRIOBPQ9H2D6 2365 aa13.69□□□□□ -0.22
CCDC88A-211ENST00000471947 SLC25A14O95258 325 aaPredicted RBP13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 APOA4P06727 396 aa13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 NCK1P16333 377 aa13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 HOXC8P31273 242 aa13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 PSEN1P49768 467 aa13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 SCAMP4Q969E2 229 aa13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 PKMYT1Q99640 499 aa13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 VPS45Q9NRW7 570 aa13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 CLIC5Q9NZA1 410 aa13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 KLQ9UEF7 1012 aa13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 SUN2Q9UH99 717 aa13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 CCL26Q9Y258 94 aa13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 A0A0C4DFX4 3053 aa13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 PLK4O00444 970 aa13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 WASHC2DQ5SRD0 308 aa13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 ANKS6Q68DC2 871 aa13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 RETSATQ6NUM9 610 aa13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 TIFABQ6ZNK6 161 aa13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 BEND7Q8N7W2 519 aaPredicted RBP13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 KLHL23Q8NBE8 558 aa13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 ZNF784Q8NCA9 323 aaPredicted RBP13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 BRSK1Q8TDC3 778 aa13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 PNMA8BQ9ULN7 279 aaPredicted RBP13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 ZSWIM8A7E2V4 1837 aa13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 ASCC3Q8N3C0 2202 aaKnown RBP13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 RNF103-CHMP3A0A140T963 221 aa13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 A0A1B0GTL3 188 aa13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 ANKRD66B4E2M5 251 aa13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 LDB2O43679 373 aa13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 SYNCRIPO60506 623 aaKnown RBP13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 PGM3O95394 542 aa13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 HLA-DPA1P20036 260 aa13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 CD70P32970 193 aa13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 PPARGP37231 505 aaPredicted RBP13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 SKIV2L2P42285 1042 aaKnown RBP13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 KLC1Q07866 573 aa13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 GRB7Q14451 532 aa13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 CAPRIN2Q6IMN6 1127 aaKnown RBP13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 C2CD4AQ8NCU7 369 aaPredicted RBP13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 STYXQ8WUJ0 223 aa13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 NCLNQ969V3 563 aa13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 DRC3Q9H069 523 aa13.68□□□□□ -0.22
CCDC88A-211ENST00000471947 CCDC189A1A4V9 331 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 GRXCR1A8MXD5 290 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 ZNF487B1APH4 448 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 SLC2A4P14672 509 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 APLP1P51693 650 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 CDH4P55283 916 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 IL2P60568 153 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 GPNMBQ14956 572 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 INSCQ1MX18 579 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 HERC6Q8IVU3 1022 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 NRG4Q8WWG1 115 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 MYCBPQ99417 103 aaPredicted RBP13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 WRAP53Q9BUR4 548 aaKnown RBP13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 SCOCQ9UIL1 159 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 INSL5Q9Y5Q6 135 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 KANSL1LA0AUZ9 987 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 RPLP2P05387 115 aaKnown RBP13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 ETS2P15036 469 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 ITPKAP23677 461 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 GRIA3P42263 894 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 CASP9P55211 416 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 YBEYP58557 167 aaPredicted RBP13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 HMGCS1Q01581 520 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 UGT3A1Q6NUS8 523 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 DOK6Q6PKX4 331 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 C3orf30Q96M34 536 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 SPATA16Q9BXB7 569 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 ZFYVE1Q9HBF4 777 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 RGSL1A5PLK6 1076 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 MATN2O00339 956 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 GRID2O43424 1007 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 FGF18O76093 207 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 GSNP06396 782 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 PKMP14618 531 aaKnown RBP13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 MYOGP15173 224 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 HOXD9P28356 352 aaPredicted RBP13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 SULT2A1Q06520 285 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 NAB1Q13506 487 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 THEMIS2Q5TEJ8 643 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 SLC39A5Q6ZMH5 540 aa13.67□□□□□ -0.22
CCDC88A-211ENST00000471947 TRIM74Q86UV6 250 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms