RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 ARID2Q68CP9 1835 aa6.19□□□□□ -1.42
VPS13D-202ENST00000460333 ISPDA4D126 451 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 ARVCFO00192 962 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 PPEF2O14830 753 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 OAS1P00973 400 aaKnown RBP6.18□□□□□ -1.42
VPS13D-202ENST00000460333 IFNA16P05015 189 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 AVPR1AP37288 418 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 ABL2P42684 1182 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 GLRBP48167 497 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 TMBIM6P55061 237 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 CCL23P55773 120 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 DLG1Q12959 904 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 DGCR6Q14129 220 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 INTS11Q5TA45 600 aaKnown RBP6.18□□□□□ -1.42
VPS13D-202ENST00000460333 OR52E8Q6IFG1 317 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 LZTR1Q8N653 840 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 ATP6V0D2Q8N8Y2 350 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 FAR1Q8WVX9 515 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 ROPN1LQ96C74 230 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 CIB1Q99828 191 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 MKL2Q9ULH7 1088 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 RNF112Q9ULX5 631 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 BAIAP2Q9UQB8 552 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 KRT87PA6NCN2 255 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 DFFAO00273 331 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 SYN3O14994 580 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 UGT2B4P06133 528 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 BDNFP23560 247 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 LMO2P25791 158 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 CCR1P32246 355 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 NUP62P37198 522 aaPredicted RBP6.18□□□□□ -1.42
VPS13D-202ENST00000460333 POLD2P49005 469 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 SLC25A11Q02978 314 aaKnown RBP6.18□□□□□ -1.42
VPS13D-202ENST00000460333 SCN1BQ07699 218 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 ACAP2Q15057 778 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 BORAQ6PGQ7 559 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 CYP4Z1Q86W10 505 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 PM20D2Q8IYS1 436 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 TMEM40Q8WWA1 233 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 GATA6Q92908 595 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 SERPINB11Q96P15 392 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 VAT1Q99536 393 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 RBM4BQ9BQ04 359 aaKnown RBP6.18□□□□□ -1.42
VPS13D-202ENST00000460333 TRMOQ9BU70 441 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 RBM4Q9BWF3 364 aaKnown RBP6.18□□□□□ -1.42
VPS13D-202ENST00000460333 SIK2Q9H0K1 926 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 POMKQ9H5K3 350 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 IGFLR1Q9H665 355 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 FBXO9Q9UK97 447 aaPredicted RBP6.18□□□□□ -1.42
VPS13D-202ENST00000460333 TBC1D30Q9Y2I9 924 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 SF3B1O75533 1304 aaKnown RBP eCLIP6.18□□□□□ -1.425e-7■■■■■ 76.6
VPS13D-202ENST00000460333 ZNFX1Q9P2E3 1918 aaKnown RBP6.18□□□□□ -1.42
VPS13D-202ENST00000460333 MYADML2A6NDP7 307 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 HAT1O14929 419 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 XYLBO75191 536 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 TULP3O75386 442 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 SNAPC5O75971 98 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 THRBP10828 461 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 ATF4P18848 351 aaPredicted RBP6.18□□□□□ -1.42
VPS13D-202ENST00000460333 HTR7P34969 479 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 CTNNB1P35222 781 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 SOX11P35716 441 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 ST8SIA6P61647 398 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 MPP1Q00013 466 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 CDH17Q12864 832 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 SFT2D3Q587I9 215 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 XKR4Q5GH76 650 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 PLET1Q6UQ28 207 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 SVOPLQ8N434 492 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 HASPINQ8TF76 798 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 HTR3CQ8WXA8 447 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 C12orf43Q96C57 262 aaKnown RBP6.18□□□□□ -1.42
VPS13D-202ENST00000460333 ARHGAP39Q9C0H5 1083 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 IRF2BPLQ9H1B7 796 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 COQ10BQ9H8M1 238 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 CNOT11Q9UKZ1 510 aaKnown RBP6.18□□□□□ -1.42
VPS13D-202ENST00000460333 EVPLQ92817 2033 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 TK2O00142 265 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 MYL12BO14950 172 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 NRP2O60462 931 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 NDUFS2O75306 463 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 TIPRLO75663 272 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 PRKD3O94806 890 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 ZNF682O95780 498 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 USP17L7P0C7H9 530 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 COL6A2P12110 1019 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 MGAT1P26572 445 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 PPM1AP35813 382 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 GRIA4P48058 902 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 NDUFV1P49821 464 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 OR2B6P58173 313 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 OGDHQ02218 1023 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 KLF1Q13351 362 aaPredicted RBP6.18□□□□□ -1.42
VPS13D-202ENST00000460333 ZNF284Q2VY69 593 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 MGAT5BQ3V5L5 792 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 STXBP5Q5T5C0 1151 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 RNASEH2BQ5TBB1 312 aaKnown RBP6.18□□□□□ -1.42
VPS13D-202ENST00000460333 TIGD7Q6NT04 549 aaPredicted RBP6.18□□□□□ -1.42
VPS13D-202ENST00000460333 KLHL35Q6PF15 583 aa6.18□□□□□ -1.42
VPS13D-202ENST00000460333 CPNE8Q86YQ8 564 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms