RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 UBP1Q9NZI7 540 aa22.87■■□□□ 1.25
PTPN4-208ENST00000460289 KRT37O76014 449 aa22.86■■□□□ 1.25
PTPN4-208ENST00000460289 EPOP01588 193 aa22.86■■□□□ 1.25
PTPN4-208ENST00000460289 HENMT1Q5T8I9 393 aaKnown RBP22.86■■□□□ 1.25
PTPN4-208ENST00000460289 DOK6Q6PKX4 331 aa22.86■■□□□ 1.25
PTPN4-208ENST00000460289 TMC3Q7Z5M5 1100 aa22.86■■□□□ 1.25
PTPN4-208ENST00000460289 ACTL9Q8TC94 416 aa22.86■■□□□ 1.25
PTPN4-208ENST00000460289 ALG3Q92685 438 aa22.86■■□□□ 1.25
PTPN4-208ENST00000460289 COX14Q96I36 57 aa22.86■■□□□ 1.25
PTPN4-208ENST00000460289 WDR24Q96S15 920 aa22.86■■□□□ 1.25
PTPN4-208ENST00000460289 GPR63Q9BZJ6 419 aa22.86■■□□□ 1.25
PTPN4-208ENST00000460289 SUDS3Q9H7L9 328 aaPredicted RBP22.86■■□□□ 1.25
PTPN4-208ENST00000460289 SHOC2Q9UQ13 582 aa22.86■■□□□ 1.25
PTPN4-208ENST00000460289 TMEM98Q9Y2Y6 226 aa22.86■■□□□ 1.25
PTPN4-208ENST00000460289 LOC285095A0A1B0GVY8 99 aa22.85■■□□□ 1.25
PTPN4-208ENST00000460289 INPP4BO15327 924 aa22.85■■□□□ 1.25
PTPN4-208ENST00000460289 CSO75390 466 aaKnown RBP22.85■■□□□ 1.25
PTPN4-208ENST00000460289 PYGMP11217 842 aa22.85■■□□□ 1.25
PTPN4-208ENST00000460289 WNT3AP56704 352 aa22.85■■□□□ 1.25
PTPN4-208ENST00000460289 OTUD4Q01804 1114 aaKnown RBP22.85■■□□□ 1.25
PTPN4-208ENST00000460289 MPP3Q13368 585 aa22.85■■□□□ 1.25
PTPN4-208ENST00000460289 RBM44Q6ZP01 1051 aaKnown RBP22.85■■□□□ 1.25
PTPN4-208ENST00000460289 RNF10Q8N5U6 811 aaKnown RBP22.85■■□□□ 1.25
PTPN4-208ENST00000460289 EID2BQ96D98 161 aa22.85■■□□□ 1.25
PTPN4-208ENST00000460289 VPS18Q9P253 973 aa22.85■■□□□ 1.25
PTPN4-208ENST00000460289 ZNF711Q9Y462 761 aa22.85■■□□□ 1.25
PTPN4-208ENST00000460289 GPSM3Q9Y4H4 160 aa22.85■■□□□ 1.25
PTPN4-208ENST00000460289 FREM2Q5SZK8 3169 aa22.85■■□□□ 1.25
PTPN4-208ENST00000460289 WDFY3Q8IZQ1 3526 aa22.85■■□□□ 1.25
PTPN4-208ENST00000460289 DMXL2Q8TDJ6 3036 aa22.84■■□□□ 1.25
PTPN4-208ENST00000460289 ASXL3Q9C0F0 2248 aa22.84■■□□□ 1.25
PTPN4-208ENST00000460289 B4DGG1 531 aa22.84■■□□□ 1.25
PTPN4-208ENST00000460289 ZNF189O75820 626 aaPredicted RBP22.84■■□□□ 1.25
PTPN4-208ENST00000460289 ASMTLO95671 621 aa22.84■■□□□ 1.25
PTPN4-208ENST00000460289 PTMAP06454 111 aaKnown RBP22.84■■□□□ 1.25
PTPN4-208ENST00000460289 PIRTP0C851 137 aa22.84■■□□□ 1.25
PTPN4-208ENST00000460289 PNLIPP16233 465 aa22.84■■□□□ 1.25
PTPN4-208ENST00000460289 GLB1P16278 677 aa22.84■■□□□ 1.25
PTPN4-208ENST00000460289 RBL1P28749 1068 aa22.84■■□□□ 1.25
PTPN4-208ENST00000460289 ADCY8P40145 1251 aa22.84■■□□□ 1.25
PTPN4-208ENST00000460289 CTBSQ01459 385 aa22.84■■□□□ 1.25
PTPN4-208ENST00000460289 ISXQ2M1V0 245 aa22.84■■□□□ 1.25
PTPN4-208ENST00000460289 C14orf28Q4W4Y0 310 aa22.84■■□□□ 1.25
PTPN4-208ENST00000460289 KDELC1Q6UW63 502 aa22.84■■□□□ 1.25
PTPN4-208ENST00000460289 NRROSQ86YC3 692 aa22.84■■□□□ 1.25
PTPN4-208ENST00000460289 CDKL3Q8IVW4 592 aaPredicted RBP22.84■■□□□ 1.25
PTPN4-208ENST00000460289 CCDC74AQ96AQ1 378 aa22.84■■□□□ 1.25
PTPN4-208ENST00000460289 HERPUD2Q9BSE4 406 aa22.84■■□□□ 1.25
PTPN4-208ENST00000460289 TRABDQ9H4I3 376 aa22.84■■□□□ 1.25
PTPN4-208ENST00000460289 SPATS2LQ9NUQ6 558 aaKnown RBP22.84■■□□□ 1.25
PTPN4-208ENST00000460289 TRIM10Q9UDY6 481 aa22.84■■□□□ 1.25
PTPN4-208ENST00000460289 RSPH14Q9UHP6 348 aa22.84■■□□□ 1.25
PTPN4-208ENST00000460289 MYLKQ15746 1914 aa22.83■■□□□ 1.25
PTPN4-208ENST00000460289 GOLGA6L9A6NEM1 432 aa22.83■■□□□ 1.25
PTPN4-208ENST00000460289 NOBOXO60393 691 aa22.83■■□□□ 1.25
PTPN4-208ENST00000460289 STK10O94804 968 aaKnown RBP22.83■■□□□ 1.25
PTPN4-208ENST00000460289 RBP3P10745 1247 aa22.83■■□□□ 1.25
PTPN4-208ENST00000460289 DCDC1P59894 354 aa22.83■■□□□ 1.25
PTPN4-208ENST00000460289 EIF3EP60228 445 aaKnown RBP22.83■■□□□ 1.25
PTPN4-208ENST00000460289 SPIDRQ14159 915 aa22.83■■□□□ 1.25
PTPN4-208ENST00000460289 PYCR3Q53H96 274 aa22.83■■□□□ 1.25
PTPN4-208ENST00000460289 CERCAMQ5T4B2 595 aa22.83■■□□□ 1.25
PTPN4-208ENST00000460289 ITPRIPL1Q6GPH6 555 aa22.83■■□□□ 1.25
PTPN4-208ENST00000460289 TRIM74Q86UV6 250 aa22.83■■□□□ 1.25
PTPN4-208ENST00000460289 GALNT13Q8IUC8 556 aa22.83■■□□□ 1.25
PTPN4-208ENST00000460289 PTCD2Q8WV60 388 aaKnown RBP22.83■■□□□ 1.25
PTPN4-208ENST00000460289 UBE2Q2Q8WVN8 375 aa22.83■■□□□ 1.25
PTPN4-208ENST00000460289 OR2M4Q96R27 311 aa22.83■■□□□ 1.25
PTPN4-208ENST00000460289 ZSCAN5AQ9BUG6 496 aa22.83■■□□□ 1.25
PTPN4-208ENST00000460289 TSGA10Q9BZW7 698 aa22.83■■□□□ 1.25
PTPN4-208ENST00000460289 RMI1Q9H9A7 625 aa22.83■■□□□ 1.25
PTPN4-208ENST00000460289 TAAR2Q9P1P5 351 aa22.83■■□□□ 1.25
PTPN4-208ENST00000460289 APPL1Q9UKG1 709 aa22.83■■□□□ 1.25
PTPN4-208ENST00000460289 CNOT6Q9ULM6 557 aaKnown RBP22.83■■□□□ 1.25
PTPN4-208ENST00000460289 PCDHB1Q9Y5F3 818 aa22.83■■□□□ 1.25
PTPN4-208ENST00000460289 NUDT21O43809 227 aaKnown RBP22.82■■□□□ 1.24
PTPN4-208ENST00000460289 USP12O75317 370 aa22.82■■□□□ 1.24
PTPN4-208ENST00000460289 ANXA9O76027 345 aa22.82■■□□□ 1.24
PTPN4-208ENST00000460289 FGF1P05230 155 aa22.82■■□□□ 1.24
PTPN4-208ENST00000460289 LRP8Q14114 963 aa22.82■■□□□ 1.24
PTPN4-208ENST00000460289 HLTFQ14527 1009 aaKnown RBP eCLIP22.82■■□□□ 1.24
PTPN4-208ENST00000460289 PDPK2PQ6A1A2 396 aa22.82■■□□□ 1.24
PTPN4-208ENST00000460289 DARS2Q6PI48 645 aaKnown RBP22.82■■□□□ 1.24
PTPN4-208ENST00000460289 SLC30A9Q6PML9 568 aa22.82■■□□□ 1.24
PTPN4-208ENST00000460289 MARK2Q7KZI7 788 aaKnown RBP22.82■■□□□ 1.24
PTPN4-208ENST00000460289 LSMEM2Q8N112 164 aa22.82■■□□□ 1.24
PTPN4-208ENST00000460289 TTC13Q8NBP0 860 aa22.82■■□□□ 1.24
PTPN4-208ENST00000460289 GPR26Q8NDV2 337 aa22.82■■□□□ 1.24
PTPN4-208ENST00000460289 ZDHHC1Q8WTX9 485 aa22.82■■□□□ 1.24
PTPN4-208ENST00000460289 OXNAD1Q96HP4 312 aaPredicted RBP22.82■■□□□ 1.24
PTPN4-208ENST00000460289 MRGPRX2Q96LB1 330 aa22.82■■□□□ 1.24
PTPN4-208ENST00000460289 SPATA16Q9BXB7 569 aa22.82■■□□□ 1.24
PTPN4-208ENST00000460289 C10orf88Q9H8K7 445 aa22.82■■□□□ 1.24
PTPN4-208ENST00000460289 HACD3Q9P035 362 aa22.82■■□□□ 1.24
PTPN4-208ENST00000460289 LRIT1Q9P2V4 623 aa22.82■■□□□ 1.24
PTPN4-208ENST00000460289 NFKBIL1Q9UBC1 381 aaPredicted RBP22.82■■□□□ 1.24
PTPN4-208ENST00000460289 RAXQ9Y2V3 346 aa22.82■■□□□ 1.24
PTPN4-208ENST00000460289 A0A0U1RQJ8 604 aa22.81■■□□□ 1.24
PTPN4-208ENST00000460289 FADS2P1A8MWK0 482 aa22.81■■□□□ 1.24
PTPN4-208ENST00000460289 NTN3O00634 580 aaPredicted RBP22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms