RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 CCL7P80098 99 aa21.1■□□□□ 0.97
HMGB3-205ENST00000455596 CTBSQ01459 385 aa21.1■□□□□ 0.97
HMGB3-205ENST00000455596 PPP2R5EQ16537 467 aa21.1■□□□□ 0.97
HMGB3-205ENST00000455596 C3orf38Q5JPI3 329 aa21.1■□□□□ 0.97
HMGB3-205ENST00000455596 HENMT1Q5T8I9 393 aaKnown RBP21.1■□□□□ 0.97
HMGB3-205ENST00000455596 CCDC70Q6NSX1 233 aa21.1■□□□□ 0.97
HMGB3-205ENST00000455596 LRRC69Q6ZNQ3 347 aa21.1■□□□□ 0.97
HMGB3-205ENST00000455596 ZC3H18Q86VM9 953 aaKnown RBP21.1■□□□□ 0.97
HMGB3-205ENST00000455596 SFTPA2Q8IWL1 248 aa21.1■□□□□ 0.97
HMGB3-205ENST00000455596 ZDHHC1Q8WTX9 485 aa21.1■□□□□ 0.97
HMGB3-205ENST00000455596 OR2M4Q96R27 311 aa21.1■□□□□ 0.97
HMGB3-205ENST00000455596 WDR24Q96S15 920 aa21.1■□□□□ 0.97
HMGB3-205ENST00000455596 LRRN3Q9H3W5 708 aa21.1■□□□□ 0.97
HMGB3-205ENST00000455596 MAGEE1Q9HCI5 957 aa21.1■□□□□ 0.97
HMGB3-205ENST00000455596 SPATS2LQ9NUQ6 558 aaKnown RBP21.1■□□□□ 0.97
HMGB3-205ENST00000455596 TAAR2Q9P1P5 351 aa21.1■□□□□ 0.97
HMGB3-205ENST00000455596 LRIT1Q9P2V4 623 aa21.1■□□□□ 0.97
HMGB3-205ENST00000455596 APPL1Q9UKG1 709 aa21.1■□□□□ 0.97
HMGB3-205ENST00000455596 RALYQ9UKM9 306 aaKnown RBP21.1■□□□□ 0.97
HMGB3-205ENST00000455596 SATB2Q9UPW6 733 aa21.1■□□□□ 0.97
HMGB3-205ENST00000455596 FREM2Q5SZK8 3169 aa21.1■□□□□ 0.97
HMGB3-205ENST00000455596 RRP8O43159 456 aaKnown RBP21.09■□□□□ 0.97
HMGB3-205ENST00000455596 NUDT21O43809 227 aaKnown RBP21.09■□□□□ 0.97
HMGB3-205ENST00000455596 DXOO77932 396 aaKnown RBP21.09■□□□□ 0.97
HMGB3-205ENST00000455596 ASMTLO95671 621 aa21.09■□□□□ 0.97
HMGB3-205ENST00000455596 COPS2P61201 443 aa21.09■□□□□ 0.97
HMGB3-205ENST00000455596 WASHC5Q12768 1159 aa21.09■□□□□ 0.97
HMGB3-205ENST00000455596 SLC30A9Q6PML9 568 aa21.09■□□□□ 0.97
HMGB3-205ENST00000455596 CCNJLQ8IV13 435 aa21.09■□□□□ 0.97
HMGB3-205ENST00000455596 HAUS1Q96CS2 278 aa21.09■□□□□ 0.97
HMGB3-205ENST00000455596 ZNF578Q96N58 590 aaPredicted RBP21.09■□□□□ 0.97
HMGB3-205ENST00000455596 VAT1Q99536 393 aa21.09■□□□□ 0.97
HMGB3-205ENST00000455596 BAG1Q99933 345 aaPredicted RBP21.09■□□□□ 0.97
HMGB3-205ENST00000455596 REXO2Q9Y3B8 237 aaKnown RBP21.09■□□□□ 0.97
HMGB3-205ENST00000455596 PCDHA3Q9Y5H8 950 aa21.09■□□□□ 0.97
HMGB3-205ENST00000455596 RNF215Q9Y6U7 377 aa21.09■□□□□ 0.97
HMGB3-205ENST00000455596 DUSP10Q9Y6W6 482 aa21.09■□□□□ 0.97
HMGB3-205ENST00000455596 PKD1L2Q7Z442 2459 aa21.09■□□□□ 0.97
HMGB3-205ENST00000455596 ANKRD11Q6UB99 2663 aaPredicted RBP21.08■□□□□ 0.97
HMGB3-205ENST00000455596 A0A1W2PQM1 296 aa21.08■□□□□ 0.97
HMGB3-205ENST00000455596 FADS2P1A8MWK0 482 aa21.08■□□□□ 0.97
HMGB3-205ENST00000455596 HACD1B0YJ81 288 aa21.08■□□□□ 0.97
HMGB3-205ENST00000455596 PMPCBO75439 489 aa21.08■□□□□ 0.97
HMGB3-205ENST00000455596 NDST3O95803 873 aa21.08■□□□□ 0.97
HMGB3-205ENST00000455596 FGF1P05230 155 aa21.08■□□□□ 0.97
HMGB3-205ENST00000455596 PIRTP0C851 137 aa21.08■□□□□ 0.97
HMGB3-205ENST00000455596 ABCG1P45844 678 aa21.08■□□□□ 0.97
HMGB3-205ENST00000455596 VAV2P52735 878 aa21.08■□□□□ 0.97
HMGB3-205ENST00000455596 PDX1P52945 283 aa21.08■□□□□ 0.97
HMGB3-205ENST00000455596 PYCR3Q53H96 274 aa21.08■□□□□ 0.97
HMGB3-205ENST00000455596 BBS12Q6ZW61 710 aa21.08■□□□□ 0.97
HMGB3-205ENST00000455596 MARK2Q7KZI7 788 aaKnown RBP21.08■□□□□ 0.97
HMGB3-205ENST00000455596 TMC3Q7Z5M5 1100 aa21.08■□□□□ 0.97
HMGB3-205ENST00000455596 GALNT13Q8IUC8 556 aa21.08■□□□□ 0.97
HMGB3-205ENST00000455596 Q8N9G6 341 aaPredicted RBP21.08■□□□□ 0.97
HMGB3-205ENST00000455596 ACRBPQ8NEB7 543 aa21.08■□□□□ 0.97
HMGB3-205ENST00000455596 QKIQ96PU8 341 aaKnown RBP eCLIP21.08■□□□□ 0.97
HMGB3-205ENST00000455596 SRPK1Q96SB4 655 aaKnown RBP21.08■□□□□ 0.97
HMGB3-205ENST00000455596 HEMGNQ9BXL5 484 aa21.08■□□□□ 0.97
HMGB3-205ENST00000455596 UBP1Q9NZI7 540 aa21.08■□□□□ 0.97
HMGB3-205ENST00000455596 VPS18Q9P253 973 aa21.08■□□□□ 0.97
HMGB3-205ENST00000455596 KLHL8Q9P2G9 620 aaPredicted RBP21.08■□□□□ 0.97
HMGB3-205ENST00000455596 FAM153AQ9UHL3 310 aa21.08■□□□□ 0.97
HMGB3-205ENST00000455596 SHOC2Q9UQ13 582 aa21.08■□□□□ 0.97
HMGB3-205ENST00000455596 ZNF711Q9Y462 761 aa21.08■□□□□ 0.97
HMGB3-205ENST00000455596 CCDC187A0A096LP49 1063 aa21.07■□□□□ 0.96
HMGB3-205ENST00000455596 CCDC66A2RUB6 948 aa21.07■□□□□ 0.96
HMGB3-205ENST00000455596 D6RAR5 112 aa21.07■□□□□ 0.96
HMGB3-205ENST00000455596 APOC4-APOC2K7ER74 178 aa21.07■□□□□ 0.96
HMGB3-205ENST00000455596 APOC2P02655 101 aa21.07■□□□□ 0.96
HMGB3-205ENST00000455596 NFKB1P19838 968 aa21.07■□□□□ 0.96
HMGB3-205ENST00000455596 CD68P34810 354 aaPredicted RBP21.07■□□□□ 0.96
HMGB3-205ENST00000455596 ACTR1BP42025 376 aa21.07■□□□□ 0.96
HMGB3-205ENST00000455596 ERVPABLB-1P60509 514 aa21.07■□□□□ 0.96
HMGB3-205ENST00000455596 ACTR1AP61163 376 aa21.07■□□□□ 0.96
HMGB3-205ENST00000455596 XRCC4Q13426 336 aa21.07■□□□□ 0.96
HMGB3-205ENST00000455596 IGF2-ASQ6U949 168 aa21.07■□□□□ 0.96
HMGB3-205ENST00000455596 PID1Q7Z2X4 250 aa21.07■□□□□ 0.96
HMGB3-205ENST00000455596 SPRED1Q7Z699 444 aa21.07■□□□□ 0.96
HMGB3-205ENST00000455596 KIAA1328Q86T90 577 aa21.07■□□□□ 0.96
HMGB3-205ENST00000455596 C17orf82Q86X59 251 aaPredicted RBP21.07■□□□□ 0.96
HMGB3-205ENST00000455596 WDR36Q8NI36 951 aaKnown RBP21.07■□□□□ 0.96
HMGB3-205ENST00000455596 HTR3CQ8WXA8 447 aa21.07■□□□□ 0.96
HMGB3-205ENST00000455596 EID2BQ96D98 161 aa21.07■□□□□ 0.96
HMGB3-205ENST00000455596 GPR63Q9BZJ6 419 aa21.07■□□□□ 0.96
HMGB3-205ENST00000455596 LACRTQ9GZZ8 138 aa21.07■□□□□ 0.96
HMGB3-205ENST00000455596 RAD18Q9NS91 495 aa21.07■□□□□ 0.96
HMGB3-205ENST00000455596 IMPACTQ9P2X3 320 aa21.07■□□□□ 0.96
HMGB3-205ENST00000455596 CNOT6Q9ULM6 557 aaKnown RBP21.07■□□□□ 0.96
HMGB3-205ENST00000455596 PCDHGA8Q9Y5G5 932 aa21.07■□□□□ 0.96
HMGB3-205ENST00000455596 ST14Q9Y5Y6 855 aa21.07■□□□□ 0.96
HMGB3-205ENST00000455596 TMX2-CTNND1H3BSU7 103 aa21.06■□□□□ 0.96
HMGB3-205ENST00000455596 PJA2O43164 708 aa21.06■□□□□ 0.96
HMGB3-205ENST00000455596 ECEL1O95672 775 aa21.06■□□□□ 0.96
HMGB3-205ENST00000455596 SLC4A1P02730 911 aa21.06■□□□□ 0.96
HMGB3-205ENST00000455596 ATP1A1P05023 1023 aaKnown RBP21.06■□□□□ 0.96
HMGB3-205ENST00000455596 CTNNA2P26232 953 aa21.06■□□□□ 0.96
HMGB3-205ENST00000455596 RBMS1P29558 406 aaKnown RBP21.06■□□□□ 0.96
HMGB3-205ENST00000455596 TNNT3P45378 269 aaPredicted RBP21.06■□□□□ 0.96
HMGB3-205ENST00000455596 MAZP56270 477 aaKnown RBP21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms