RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 PADI4Q9UM07 663 aa15.12■□□□□ 0.01
LIMS3-201ENST00000437679 SUFUQ9UMX1 484 aa15.12■□□□□ 0.01
LIMS3-201ENST00000437679 SLC17A4Q9Y2C5 497 aa15.12■□□□□ 0.01
LIMS3-201ENST00000437679 ZNF711Q9Y462 761 aa15.12■□□□□ 0.01
LIMS3-201ENST00000437679 ARHGEF17Q96PE2 2063 aaPredicted RBP15.12■□□□□ 0.01
LIMS3-201ENST00000437679 MYLKQ15746 1914 aa15.11■□□□□ 0.01
LIMS3-201ENST00000437679 LOC285095A0A1B0GVY8 99 aa15.11■□□□□ 0.01
LIMS3-201ENST00000437679 TRABD2BA6NFA1 517 aa15.11■□□□□ 0.01
LIMS3-201ENST00000437679 INPP4BO15327 924 aa15.11■□□□□ 0.01
LIMS3-201ENST00000437679 KCNN4O15554 427 aa15.11■□□□□ 0.01
LIMS3-201ENST00000437679 ASMTLO95671 621 aa15.11■□□□□ 0.01
LIMS3-201ENST00000437679 MT-CO3P00414 261 aa15.11■□□□□ 0.01
LIMS3-201ENST00000437679 EPOP01588 193 aa15.11■□□□□ 0.01
LIMS3-201ENST00000437679 SLC4A1P02730 911 aa15.11■□□□□ 0.01
LIMS3-201ENST00000437679 IVLP07476 585 aa15.11■□□□□ 0.01
LIMS3-201ENST00000437679 CCDC175P0C221 793 aa15.11■□□□□ 0.01
LIMS3-201ENST00000437679 POLD2P49005 469 aa15.11■□□□□ 0.01
LIMS3-201ENST00000437679 ILF3Q12906 894 aaKnown RBP eCLIP15.11■□□□□ 0.01
LIMS3-201ENST00000437679 TARDBPQ13148 414 aaKnown RBP eCLIP15.11■□□□□ 0.01
LIMS3-201ENST00000437679 HENMT1Q5T8I9 393 aaKnown RBP15.11■□□□□ 0.01
LIMS3-201ENST00000437679 TMC3Q7Z5M5 1100 aa15.11■□□□□ 0.01
LIMS3-201ENST00000437679 CACTIN-AS1Q8N1I8 211 aa15.11■□□□□ 0.01
LIMS3-201ENST00000437679 SLC25A41Q8N5S1 370 aa15.11■□□□□ 0.01
LIMS3-201ENST00000437679 KYQ8NBH2 561 aa15.11■□□□□ 0.01
LIMS3-201ENST00000437679 MRGPRX2Q96LB1 330 aa15.11■□□□□ 0.01
LIMS3-201ENST00000437679 FAM118BQ9BPY3 351 aa15.11■□□□□ 0.01
LIMS3-201ENST00000437679 FSD1LQ9BXM9 530 aa15.11■□□□□ 0.01
LIMS3-201ENST00000437679 GSDMCQ9BYG8 508 aa15.11■□□□□ 0.01
LIMS3-201ENST00000437679 CDH19Q9H159 772 aa15.11■□□□□ 0.01
LIMS3-201ENST00000437679 GBA3Q9H227 469 aa15.11■□□□□ 0.01
LIMS3-201ENST00000437679 CCDC86Q9H6F5 360 aaKnown RBP15.11■□□□□ 0.01
LIMS3-201ENST00000437679 TRNAU1APQ9NX07 287 aaKnown RBP15.11■□□□□ 0.01
LIMS3-201ENST00000437679 TMEM98Q9Y2Y6 226 aa15.11■□□□□ 0.01
LIMS3-201ENST00000437679 ACACAQ13085 2346 aa15.1■□□□□ 0.01
LIMS3-201ENST00000437679 USP24Q9UPU5 2620 aa15.1■□□□□ 0.01
LIMS3-201ENST00000437679 ANXA9O76027 345 aa15.1■□□□□ 0.01
LIMS3-201ENST00000437679 HLA-DPA1P20036 260 aa15.1■□□□□ 0.01
LIMS3-201ENST00000437679 GEMP55040 296 aa15.1■□□□□ 0.01
LIMS3-201ENST00000437679 CAMK2BQ13554 666 aa15.1■□□□□ 0.01
LIMS3-201ENST00000437679 PEX6Q13608 980 aa15.1■□□□□ 0.01
LIMS3-201ENST00000437679 PRPSAP1Q14558 356 aa15.1■□□□□ 0.01
LIMS3-201ENST00000437679 SIRPB2Q5JXA9 342 aa15.1■□□□□ 0.01
LIMS3-201ENST00000437679 ANKRD20A2Q5SQ80 823 aa15.1■□□□□ 0.01
LIMS3-201ENST00000437679 ANKRD20A1Q5TYW2 823 aa15.1■□□□□ 0.01
LIMS3-201ENST00000437679 ANKRD20A3Q5VUR7 823 aa15.1■□□□□ 0.01
LIMS3-201ENST00000437679 TRIM74Q86UV6 250 aa15.1■□□□□ 0.01
LIMS3-201ENST00000437679 DCBLD1Q8N8Z6 715 aa15.1■□□□□ 0.01
LIMS3-201ENST00000437679 OR6C4Q8NGE1 309 aa15.1■□□□□ 0.01
LIMS3-201ENST00000437679 GPBAR1Q8TDU6 330 aa15.1■□□□□ 0.01
LIMS3-201ENST00000437679 SCARF2Q96GP6 870 aaPredicted RBP15.1■□□□□ 0.01
LIMS3-201ENST00000437679 OXNAD1Q96HP4 312 aaPredicted RBP15.1■□□□□ 0.01
LIMS3-201ENST00000437679 COX14Q96I36 57 aa15.1■□□□□ 0.01
LIMS3-201ENST00000437679 WDR24Q96S15 920 aa15.1■□□□□ 0.01
LIMS3-201ENST00000437679 SPATA16Q9BXB7 569 aa15.1■□□□□ 0.01
LIMS3-201ENST00000437679 DPEP2Q9H4A9 486 aa15.1■□□□□ 0.01
LIMS3-201ENST00000437679 TRABDQ9H4I3 376 aa15.1■□□□□ 0.01
LIMS3-201ENST00000437679 GPSM3Q9Y4H4 160 aa15.1■□□□□ 0.01
LIMS3-201ENST00000437679 ASPMQ8IZT6 3477 aa15.09■□□□□ 0.01
LIMS3-201ENST00000437679 FADS2P1A8MWK0 482 aa15.09■□□□□ 0.01
LIMS3-201ENST00000437679 B4DGG1 531 aa15.09■□□□□ 0.01
LIMS3-201ENST00000437679 FUCA1P04066 466 aa15.09■□□□□ 0.01
LIMS3-201ENST00000437679 ADCY8P40145 1251 aa15.09■□□□□ 0.01
LIMS3-201ENST00000437679 DCDC1P59894 354 aa15.09■□□□□ 0.01
LIMS3-201ENST00000437679 SLC1A5Q15758 541 aa15.09■□□□□ 0.01
LIMS3-201ENST00000437679 ZNF569Q5MCW4 686 aa15.09■□□□□ 0.01
LIMS3-201ENST00000437679 PERM1Q5SV97 790 aa15.09■□□□□ 0.01
LIMS3-201ENST00000437679 SEL1L2Q5TEA6 688 aa15.09■□□□□ 0.01
LIMS3-201ENST00000437679 CDCP2Q5VXM1 449 aa15.09■□□□□ 0.01
LIMS3-201ENST00000437679 ALS2CLQ60I27 953 aa15.09■□□□□ 0.01
LIMS3-201ENST00000437679 OGFOD3Q6PK18 319 aa15.09■□□□□ 0.01
LIMS3-201ENST00000437679 MARK2Q7KZI7 788 aaKnown RBP15.09■□□□□ 0.01
LIMS3-201ENST00000437679 GALNT13Q8IUC8 556 aa15.09■□□□□ 0.01
LIMS3-201ENST00000437679 GPR156Q8NFN8 814 aa15.09■□□□□ 0.01
LIMS3-201ENST00000437679 CCL4L1Q8NHW4 92 aa15.09■□□□□ 0.01
LIMS3-201ENST00000437679 WDR48Q8TAF3 677 aa15.09■□□□□ 0.01
LIMS3-201ENST00000437679 EID2BQ96D98 161 aa15.09■□□□□ 0.01
LIMS3-201ENST00000437679 SPATA13Q96N96 652 aa15.09■□□□□ 0.01
LIMS3-201ENST00000437679 PPP1R2P1Q96PQ5 205 aa15.09■□□□□ 0.01
LIMS3-201ENST00000437679 ALS2CR12Q96Q35 445 aa15.09■□□□□ 0.01
LIMS3-201ENST00000437679 DEPDC7Q96QD5 511 aa15.09■□□□□ 0.01
LIMS3-201ENST00000437679 OR2M4Q96R27 311 aa15.09■□□□□ 0.01
LIMS3-201ENST00000437679 ZSCAN5AQ9BUG6 496 aa15.09■□□□□ 0.01
LIMS3-201ENST00000437679 LZTFL1Q9NQ48 299 aa15.09■□□□□ 0.01
LIMS3-201ENST00000437679 HACD3Q9P035 362 aa15.09■□□□□ 0.01
LIMS3-201ENST00000437679 VPS18Q9P253 973 aa15.09■□□□□ 0.01
LIMS3-201ENST00000437679 NFKBIL1Q9UBC1 381 aaPredicted RBP15.09■□□□□ 0.01
LIMS3-201ENST00000437679 ZMIZ1Q9ULJ6 1067 aa15.09■□□□□ 0.01
LIMS3-201ENST00000437679 CNOT6Q9ULM6 557 aaKnown RBP15.09■□□□□ 0.01
LIMS3-201ENST00000437679 AAR2Q9Y312 384 aaKnown RBP15.09■□□□□ 0.01
LIMS3-201ENST00000437679 SPO11Q9Y5K1 396 aa15.09■□□□□ 0.01
LIMS3-201ENST00000437679 APC2O95996 2303 aa15.08■□□□□ 0
LIMS3-201ENST00000437679 FGF1P05230 155 aa15.08■□□□□ 0
LIMS3-201ENST00000437679 PSMB4P28070 264 aa15.08■□□□□ 0
LIMS3-201ENST00000437679 CHRNA4P43681 627 aa15.08■□□□□ 0
LIMS3-201ENST00000437679 CTBSQ01459 385 aa15.08■□□□□ 0
LIMS3-201ENST00000437679 KLF1Q13351 362 aaPredicted RBP15.08■□□□□ 0
LIMS3-201ENST00000437679 PDPK2PQ6A1A2 396 aa15.08■□□□□ 0
LIMS3-201ENST00000437679 ZNF662Q6ZS27 426 aa15.08■□□□□ 0
LIMS3-201ENST00000437679 TRAM1L1Q8N609 369 aa15.08■□□□□ 0
LIMS3-201ENST00000437679 GPR26Q8NDV2 337 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms