RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 SIKE1Q9BRV8 207 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 SMG9Q9H0W8 520 aaKnown RBP9.45□□□□□ -0.9
CUX1-206ENST00000437600 PIF1Q9H611 641 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 ZBTB26Q9HCK0 441 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 VPS45Q9NRW7 570 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 ANKRD6Q9Y2G4 727 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 TRAF6Q9Y4K3 522 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 URODP06132 367 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 ZDHHC11BP0C7U3 371 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 LINC00271P0C7V0 271 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 ZNF135P52742 658 aaPredicted RBP9.45□□□□□ -0.9
CUX1-206ENST00000437600 PLIN5Q00G26 463 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 NRF1Q16656 503 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 TMCO4Q5TGY1 634 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 KBTBD6Q86V97 674 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 HERC6Q8IVU3 1022 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 LILRA2Q8N149 483 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 SLC39A11Q8N1S5 342 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 CEP70Q8NHQ1 597 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 KLHL32Q96NJ5 620 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 SLX1AQ9BQ83 275 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 STN1Q9H668 368 aaKnown RBP9.45□□□□□ -0.9
CUX1-206ENST00000437600 ZNF334Q9HCZ1 680 aaPredicted RBP9.45□□□□□ -0.9
CUX1-206ENST00000437600 OLA1Q9NTK5 396 aaKnown RBP9.45□□□□□ -0.9
CUX1-206ENST00000437600 TRPM5Q9NZQ8 1165 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 AFF4Q9UHB7 1163 aaKnown RBP9.45□□□□□ -0.9
CUX1-206ENST00000437600 MYOFQ9NZM1 2061 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 SPEGQ15772 3267 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 K7ERQ8 282 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 ACSL4O60488 711 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 STC2O76061 302 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 FGF18O76093 207 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 LYNP07948 512 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 MBL2P11226 248 aaPredicted RBP9.45□□□□□ -0.9
CUX1-206ENST00000437600 MYL4P12829 197 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 ITGB6P18564 788 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 NDST2P52849 883 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 FOXD4Q12950 439 aaPredicted RBP9.45□□□□□ -0.9
CUX1-206ENST00000437600 PDAP1Q13442 181 aaKnown RBP9.45□□□□□ -0.9
CUX1-206ENST00000437600 DDIASQ8IXT1 998 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 PIANPQ8IYJ0 282 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 FIBCD1Q8N539 461 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 PTGR2Q8N8N7 351 aaPredicted RBP9.45□□□□□ -0.9
CUX1-206ENST00000437600 LPCAT1Q8NF37 534 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 GATA6Q92908 595 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 ATP6V1E2Q96A05 226 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 CDKN2AIPNLQ96HQ2 116 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 UBXN10Q96LJ8 280 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 CDK15Q96Q40 435 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 ACOX2Q99424 681 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 YIPF2Q9BWQ6 316 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 POLR1EQ9GZS1 481 aaKnown RBP9.45□□□□□ -0.9
CUX1-206ENST00000437600 MID1IP1Q9NPA3 183 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 NSMCE4AQ9NXX6 385 aa9.45□□□□□ -0.9
CUX1-206ENST00000437600 MROH6A6NGR9 719 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 CDC7O00311 574 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 FBP2O00757 339 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 UBDO15205 165 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 IGLV3-27P01718 113 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 APOA4P06727 396 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 CA3P07451 260 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 GFAPP14136 432 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 CTPS1P17812 591 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 DNAJB1P25685 340 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 PRKAA2P54646 552 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 GRB7Q14451 532 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 DBN1Q16643 649 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 ZNF423Q2M1K9 1284 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 C18orf21Q32NC0 220 aaPredicted RBP9.44□□□□□ -0.9
CUX1-206ENST00000437600 VPS26BQ4G0F5 336 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 METTL21CQ5VZV1 264 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 FBXL19Q6PCT2 694 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 BNC2Q6ZN30 1099 aaPredicted RBP9.44□□□□□ -0.9
CUX1-206ENST00000437600 PAF1Q8N7H5 531 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 ST13P5Q8NFI4 369 aaPredicted RBP9.44□□□□□ -0.9
CUX1-206ENST00000437600 RP9Q8TA86 221 aaKnown RBP9.44□□□□□ -0.9
CUX1-206ENST00000437600 TM6SF2Q9BZW4 377 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 EFCAB1Q9HAE3 211 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 SUN2Q9UH99 717 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 SCOCQ9UIL1 159 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 ASB1Q9Y576 335 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 DNAJC15Q9Y5T4 150 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 IGLV3-10A0A075B6K4 115 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 LOC285095A0A1B0GVY8 99 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 AP3B1O00203 1094 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 BAIAP3O94812 1187 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 PGM3O95394 542 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 ETS2P15036 469 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 VCLP18206 1134 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 CTNNB1P35222 781 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 CASP2P42575 452 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 SMAD3P84022 425 aaKnown RBP9.44□□□□□ -0.9
CUX1-206ENST00000437600 ZNF33AQ06730 810 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 FASTKQ14296 549 aaKnown RBP9.44□□□□□ -0.9
CUX1-206ENST00000437600 CAPRIN1Q14444 709 aaKnown RBP9.44□□□□□ -0.9
CUX1-206ENST00000437600 TSNQ15631 228 aaKnown RBP9.44□□□□□ -0.9
CUX1-206ENST00000437600 AAK1Q2M2I8 961 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 UNC50Q53HI1 259 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 OR52E8Q6IFG1 317 aa9.44□□□□□ -0.9
CUX1-206ENST00000437600 KLC3Q6P597 504 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms