RNA–Protein interactions for RNA: ENST00000429277.6

LDB3-205, Transcript of LIM domain binding 3, humanhuman

TSL 2 BASIC

Gene LDB3, Length 5,436 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-205ENST00000429277 LRTM1Q9HBL6 345 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 TMEM138Q9NPI0 162 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 POLR3HQ9Y535 204 aaPredicted RBP12.75□□□□□ -0.37
LDB3-205ENST00000429277 ABLIM1O14639 778 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 EPHA3P29320 983 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 MBTD1Q05BQ5 628 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 FAAH2Q6GMR7 532 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 DEF8Q6ZN54 512 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 MRPL45Q9BRJ2 306 aaKnown RBP12.75□□□□□ -0.37
LDB3-205ENST00000429277 NIFKQ9BYG3 293 aaKnown RBP12.75□□□□□ -0.37
LDB3-205ENST00000429277 DNAJC28Q9NX36 388 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 MAT2BQ9NZL9 334 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 IFT80Q9P2H3 777 aaPredicted RBP12.75□□□□□ -0.37
LDB3-205ENST00000429277 CKLFQ9UBR5 152 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 PSMD13Q9UNM6 376 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 MPZL2O60487 215 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 MMP3P08254 477 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 CCT3P49368 545 aaKnown RBP12.75□□□□□ -0.37
LDB3-205ENST00000429277 ARFIP1P53367 373 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 CDH4P55283 916 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 HECTD2Q5U5R9 776 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 CLIP3Q96DZ5 547 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 MARK4Q96L34 752 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 QKIQ96PU8 341 aaKnown RBP eCLIP12.75□□□□□ -0.37
LDB3-205ENST00000429277 GPR20Q99678 358 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 PCBD2Q9H0N5 130 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 SSU72Q9NP77 194 aaKnown RBP12.75□□□□□ -0.37
LDB3-205ENST00000429277 PNPLA8Q9NP80 782 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 CFAP97Q9P2B7 532 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 AK5Q9Y6K8 562 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 ATXN2Q99700 1313 aaKnown RBP12.75□□□□□ -0.37
LDB3-205ENST00000429277 COL3A1P02461 1466 aaPredicted RBP12.75□□□□□ -0.37
LDB3-205ENST00000429277 G3V2T6 193 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 SSNA1O43805 119 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 SCN2BO60939 215 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 STK16O75716 305 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 PTX3P26022 381 aaPredicted RBP12.75□□□□□ -0.37
LDB3-205ENST00000429277 IL12AP29459 219 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 GMFBP60983 142 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 ITGA7Q13683 1181 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 SMCO1Q147U7 214 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 PYDC2Q56P42 97 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 C9orf64Q5T6V5 341 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 FEM1CQ96JP0 617 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 CLCC1Q96S66 551 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 C1QTNF1Q9BXJ1 281 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 GBA3Q9H227 469 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 KCNN2Q9H2S1 579 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 A0A0J9YYE9 177 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 B4GALT5O43286 388 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 KHDRBS3O75525 346 aaKnown RBP12.75□□□□□ -0.37
LDB3-205ENST00000429277 ZNF37AP17032 561 aaPredicted RBP12.75□□□□□ -0.37
LDB3-205ENST00000429277 PRDX6P30041 224 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 SLC7A2P52569 658 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 POU5F1Q01860 360 aaKnown RBP12.75□□□□□ -0.37
LDB3-205ENST00000429277 ZNF697Q5TEC3 545 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 FAM98AQ8NCA5 519 aaKnown RBP12.75□□□□□ -0.37
LDB3-205ENST00000429277 AGAP11Q8TF27 550 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 C7orf26Q96N11 449 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 ELL3Q9HB65 397 aaPredicted RBP12.75□□□□□ -0.37
LDB3-205ENST00000429277 PPIEQ9UNP9 301 aaKnown RBP12.75□□□□□ -0.37
LDB3-205ENST00000429277 PLLPQ9Y342 182 aa12.75□□□□□ -0.37
LDB3-205ENST00000429277 TBC1D3DA0A087WVF3 549 aa12.74□□□□□ -0.37
LDB3-205ENST00000429277 TBC1D3IA0A087WXS9 549 aa12.74□□□□□ -0.37
LDB3-205ENST00000429277 TBC1D3EA0A087X179 549 aa12.74□□□□□ -0.37
LDB3-205ENST00000429277 TBC1D3KA0A087X1G2 549 aa12.74□□□□□ -0.37
LDB3-205ENST00000429277 SMIM28A0A1B0GU29 152 aa12.74□□□□□ -0.37
LDB3-205ENST00000429277 TBC1D3FA6NER0 549 aaPredicted RBP12.74□□□□□ -0.37
LDB3-205ENST00000429277 TBC1D3LB9A6J9 549 aa12.74□□□□□ -0.37
LDB3-205ENST00000429277 TBC1D3HP0C7X1 549 aa12.74□□□□□ -0.37
LDB3-205ENST00000429277 TAF10Q12962 218 aa12.74□□□□□ -0.37
LDB3-205ENST00000429277 ZIK1Q3SY52 487 aaPredicted RBP12.74□□□□□ -0.37
LDB3-205ENST00000429277 GPR158Q5T848 1215 aa12.74□□□□□ -0.37
LDB3-205ENST00000429277 TBC1D3GQ6DHY5 549 aa12.74□□□□□ -0.37
LDB3-205ENST00000429277 TBC1D3CQ6IPX1 549 aa12.74□□□□□ -0.37
LDB3-205ENST00000429277 TBC1D3Q8IZP1 549 aaPredicted RBP12.74□□□□□ -0.37
LDB3-205ENST00000429277 GLIS3Q8NEA6 775 aa12.74□□□□□ -0.37
LDB3-205ENST00000429277 PIH1D2Q8WWB5 315 aa12.74□□□□□ -0.37
LDB3-205ENST00000429277 KLRG1Q96E93 195 aa12.74□□□□□ -0.37
LDB3-205ENST00000429277 NARS2Q96I59 477 aaKnown RBP12.74□□□□□ -0.37
LDB3-205ENST00000429277 HIPK3Q9H422 1215 aa12.74□□□□□ -0.37
LDB3-205ENST00000429277 ING3Q9NXR8 418 aa12.74□□□□□ -0.37
LDB3-205ENST00000429277 C2P06681 752 aa12.74□□□□□ -0.37
LDB3-205ENST00000429277 NDST2P52849 883 aa12.74□□□□□ -0.37
LDB3-205ENST00000429277 MTX3Q5HYI7 312 aa12.74□□□□□ -0.37
LDB3-205ENST00000429277 PRAMEF19Q5SWL8 479 aa12.74□□□□□ -0.37
LDB3-205ENST00000429277 XYLT1Q86Y38 959 aa12.74□□□□□ -0.37
LDB3-205ENST00000429277 CNTD1Q8N815 330 aa12.74□□□□□ -0.37
LDB3-205ENST00000429277 C12orf50Q8NA57 414 aaPredicted RBP12.74□□□□□ -0.37
LDB3-205ENST00000429277 FBXO22Q8NEZ5 403 aa12.74□□□□□ -0.37
LDB3-205ENST00000429277 ZNF563Q8TA94 476 aa12.74□□□□□ -0.37
LDB3-205ENST00000429277 HM13Q8TCT9 377 aa12.74□□□□□ -0.37
LDB3-205ENST00000429277 ACBD6Q9BR61 282 aa12.74□□□□□ -0.37
LDB3-205ENST00000429277 PCDHA2Q9Y5H9 948 aa12.74□□□□□ -0.37
LDB3-205ENST00000429277 A0A1B0GVM2 712 aa12.74□□□□□ -0.37
LDB3-205ENST00000429277 A0A1W2PQH9 124 aa12.74□□□□□ -0.37
LDB3-205ENST00000429277 TCAF2A6NFQ2 919 aa12.74□□□□□ -0.37
LDB3-205ENST00000429277 CLDN4O14493 209 aa12.74□□□□□ -0.37
LDB3-205ENST00000429277 AP2A1O95782 977 aa12.74□□□□□ -0.37
LDB3-205ENST00000429277 HNRNPLP14866 589 aaKnown RBP eCLIP12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms